View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13720_low_1 (Length: 669)
Name: NF13720_low_1
Description: NF13720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13720_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 402 - 652
Target Start/End: Original strand, 32888119 - 32888369
Alignment:
| Q |
402 |
gcgatctccctgcaaaattaaacatgcactggtcctaataacggtgacaaatattcccaccaataaatatcctataaggtaaaaccaaaatacctcaagc |
501 |
Q |
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| T |
32888119 |
gcgatctccctgcaaaattaaacatgcactggtcctaataacggtgacaaatattcccaccaataaatatcctataaggtaaaaccaaaatacctcgagc |
32888218 |
T |
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| Q |
502 |
aatgaatactttatatatgaagttttatttacaagaataacatatgaagttgggttctttaattttacaagttagaaaattgttccttattattatttta |
601 |
Q |
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| T |
32888219 |
aatgaatactttatatatgaagttttatttacaagaataacatatgaagttgtgttctttaattttacaagttagaaaattgttccttattattatttta |
32888318 |
T |
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| Q |
602 |
catcttgttacgtggatagccattggattccactttccagcttgtcctttc |
652 |
Q |
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| T |
32888319 |
catcttgttacgtggatagccattggtttccactttccagcttgtcctttc |
32888369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 32887729 - 32888049
Alignment:
| Q |
19 |
cacattaagattgaattggtgatcattgatcatttaaaatgggcacaccagcaatgaaattcaaggattgtgtatnnnnnnntaatggcttggttccatt |
118 |
Q |
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| T |
32887729 |
cacaataagattgatttggtgatcattgatcatttaaaatgggcacaccagcaatgaaattcaaggattgtgtataaaaaaataatggcttggttcca-t |
32887827 |
T |
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| Q |
119 |
tccgagtttgtacatccagcttgttaataaaactctta-------ttatatcatatgttttctcatatcttcatatattcttttcttttcttaaacagag |
211 |
Q |
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| T |
32887828 |
tccgagtttgtacatccagcttgttaataaaactcttactatatcatatatcatatgttttctcatatcttcatatattcttttcttttttttaaccgag |
32887927 |
T |
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| Q |
212 |
tatcttctgcgcgtaactgtggacatcaaactttaagttttaatgctgctacatgttcaagattggatttaaacatatgaccttgattaaactgaaagag |
311 |
Q |
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| T |
32887928 |
tatcttctgcatgcaactatggacggaaaactttaaattttaatgctgctacatgtttaaggctggatttgaacatataaccttgattaaactggaagac |
32888027 |
T |
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| Q |
312 |
actcgtgtcatctcatctaaac |
333 |
Q |
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| T |
32888028 |
actcgtgtcatctcatataaac |
32888049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 33404347 - 33404432
Alignment:
| Q |
246 |
aagttttaatgctgctacatgttcaagattggatttaaacatatgaccttgattaaactgaaagagactcgtgtcatctcatctaa |
331 |
Q |
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| T |
33404347 |
aagttttaatgctgctacatgcttaaaattggattcaaacccatgactttggttgagctataagagacttgtgtcatctcatctaa |
33404432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 3772625 - 3772693
Alignment:
| Q |
263 |
catgttcaagattggatttaaacatatgaccttgattaaactgaaagagactcgtgtcatctcatctaa |
331 |
Q |
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| T |
3772625 |
catgttcaagattggattcgaacttaggaccttggttaaattagaagagacttgtgtcatctcatctaa |
3772693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 42266834 - 42266754
Alignment:
| Q |
251 |
ttaatgctgctacatgttcaagattggatttaaacatatgaccttgattaaactgaaagagactcgtgtcatctcatctaa |
331 |
Q |
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| T |
42266834 |
ttaatgttgctgcatgttcaagattggatttgaaaccatgactttagttaaactataagagacccgtgtcatctcatctaa |
42266754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 21089354 - 21089398
Alignment:
| Q |
293 |
cttgattaaactgaaagagactcgtgtcatctcatctaaacgttc |
337 |
Q |
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| T |
21089354 |
cttggttaaactagaagagacttgtgtcatctcatctaaacgttc |
21089398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 36086881 - 36086845
Alignment:
| Q |
298 |
ttaaactgaaagagactcgtgtcatctcatctaaacg |
334 |
Q |
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| T |
36086881 |
ttaaactaaaagagactcttgtcatctcatctaaacg |
36086845 |
T |
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