View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13720_low_2 (Length: 628)

Name: NF13720_low_2
Description: NF13720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13720_low_2
NF13720_low_2
[»] chr6 (12 HSPs)
chr6 (267-613)||(15311031-15311374)
chr6 (267-613)||(15316325-15316668)
chr6 (75-273)||(15310780-15310984)
chr6 (75-273)||(15316074-15316278)
chr6 (434-604)||(19232491-19232655)
chr6 (501-602)||(17079571-17079673)
chr6 (501-578)||(11061261-11061338)
chr6 (13-59)||(15310321-15310368)
chr6 (13-59)||(15315615-15315662)
chr6 (471-546)||(17874238-17874313)
chr6 (501-546)||(26526189-26526234)
chr6 (501-557)||(33019639-33019695)
[»] chr7 (8 HSPs)
chr7 (415-546)||(10282257-10282383)
chr7 (415-610)||(4076852-4077043)
chr7 (501-610)||(29113921-29114031)
chr7 (501-560)||(28060236-28060295)
chr7 (501-610)||(27941866-27941976)
chr7 (501-546)||(34231357-34231402)
chr7 (501-560)||(7459094-7459153)
chr7 (501-557)||(39060168-39060224)
[»] chr8 (5 HSPs)
chr8 (471-604)||(11155146-11155280)
chr8 (501-605)||(17658489-17658594)
chr8 (475-569)||(23679795-23679889)
chr8 (501-610)||(26031150-26031260)
chr8 (501-574)||(45256237-45256310)
[»] chr3 (18 HSPs)
chr3 (501-610)||(46909039-46909149)
chr3 (501-605)||(50543879-50543984)
chr3 (415-547)||(46665057-46665184)
chr3 (415-605)||(23818154-23818340)
chr3 (475-605)||(24124218-24124349)
chr3 (494-610)||(47536919-47537036)
chr3 (501-578)||(32093322-32093399)
chr3 (501-569)||(11639624-11639692)
chr3 (475-604)||(26845503-26845633)
chr3 (472-605)||(43122043-43122177)
chr3 (501-605)||(33121694-33121799)
chr3 (512-560)||(8695314-8695362)
chr3 (512-560)||(9047201-9047249)
chr3 (415-610)||(38898546-38898737)
chr3 (475-570)||(25341747-25341842)
chr3 (501-572)||(36635096-36635167)
chr3 (501-581)||(27925464-27925544)
chr3 (513-557)||(54558855-54558899)
[»] chr1 (13 HSPs)
chr1 (426-610)||(7397084-7397263)
chr1 (471-598)||(21335606-21335734)
chr1 (475-605)||(41181842-41181973)
chr1 (475-560)||(30111347-30111432)
chr1 (471-598)||(12173836-12173964)
chr1 (501-610)||(26720357-26720467)
chr1 (501-610)||(41061516-41061626)
chr1 (501-569)||(9903679-9903747)
chr1 (501-545)||(17707654-17707698)
chr1 (501-572)||(49968985-49969056)
chr1 (501-578)||(47107085-47107162)
chr1 (501-545)||(10711551-10711595)
chr1 (501-557)||(43810468-43810524)
[»] chr5 (8 HSPs)
chr5 (475-605)||(40089971-40090102)
chr5 (471-569)||(20591764-20591862)
chr5 (475-610)||(4922866-4923002)
chr5 (501-578)||(4416105-4416182)
chr5 (501-605)||(34874816-34874921)
chr5 (475-610)||(6048856-6048991)
chr5 (475-610)||(20209091-20209227)
chr5 (511-605)||(7001142-7001237)
[»] chr4 (15 HSPs)
chr4 (415-605)||(18935245-18935431)
chr4 (501-605)||(12881062-12881167)
chr4 (501-605)||(20395254-20395359)
chr4 (501-560)||(42823102-42823161)
chr4 (511-605)||(53487330-53487425)
chr4 (501-581)||(42777896-42777976)
chr4 (501-605)||(30274189-30274294)
chr4 (501-569)||(18106970-18107038)
chr4 (501-569)||(31863924-31863992)
chr4 (475-578)||(449683-449786)
chr4 (501-560)||(10563732-10563791)
chr4 (501-560)||(53779703-53779762)
chr4 (512-605)||(34322696-34322790)
chr4 (511-560)||(29213404-29213453)
chr4 (501-557)||(29554166-29554222)
[»] chr2 (5 HSPs)
chr2 (468-581)||(11026725-11026838)
chr2 (501-569)||(7075770-7075838)
chr2 (415-553)||(30273577-30273710)
chr2 (501-569)||(1379740-1379808)
chr2 (501-569)||(3000162-3000230)
[»] scaffold0308 (1 HSPs)
scaffold0308 (501-605)||(11736-11841)
[»] scaffold0007 (1 HSPs)
scaffold0007 (501-605)||(181787-181892)
[»] scaffold0179 (1 HSPs)
scaffold0179 (501-610)||(7186-7296)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 267 - 613
Target Start/End: Original strand, 15311031 - 15311374
Alignment:
Q  267 tccaacacaactccattaagtgaagtattgaannnnnnnnc-gaacaatcaaaaatggaatatataaccacaagaaataagcaatcccaatagcacaagc 365  Q
    ||||||||||| ||||||||||||||||||||          ||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  15311031 tccaacacaacaccattaagtgaagtattgaatcttttttttgaacaataaaaaatagaatatataaccacaagaaacaagcaatcccaatagcacaagc 15311130  T
Q  366 tctgccaaaggaataactgaatatacacaaagacagttaggccaaacaaaaaccattaagttatgcctaaacattgtaaagggctcgaacaccacctatt 465  Q
    | |||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||       
T  15311131 tgtgccaaaggaattactgaatatagacagagtcagttaggccaaacaaaaaccattaagtgatgcccaagcattgtaaaaggctcgaacaccacct--- 15311227  T
Q  466 taatttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccat 565  Q
      ||||||| ||||||||||||||||| || |||||||||||   |||||||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  15311228 --atttgtgtcaaacctaaaagtagcctttatgcatttcatctgggctaaagacatatattttactttatgcaacaacctgagcataggagttacaccat 15311325  T
Q  566 tattaaacagcctatt-ttacactcattccataaaacccaagcacagag 613  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  15311326 tattaaacagcctattattacactcattccataaaactcaagcacagag 15311374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 267 - 613
Target Start/End: Original strand, 15316325 - 15316668
Alignment:
Q  267 tccaacacaactccattaagtgaagtattgaannnnnnnnc-gaacaatcaaaaatggaatatataaccacaagaaataagcaatcccaatagcacaagc 365  Q
    ||||||||||| ||||||||||||||||||||          ||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  15316325 tccaacacaacaccattaagtgaagtattgaatcttttttttgaacaataaaaaatagaatatataaccacaagaaacaagcaatcccaatagcacaagc 15316424  T
Q  366 tctgccaaaggaataactgaatatacacaaagacagttaggccaaacaaaaaccattaagttatgcctaaacattgtaaagggctcgaacaccacctatt 465  Q
    | |||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||       
T  15316425 tgtgccaaaggaattactgaatatagacagagtcagttaggccaaacaaaaaccattaagtgatgcccaagcattgtaaaaggctcgaacaccacct--- 15316521  T
Q  466 taatttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccat 565  Q
      ||||||| ||||||||||||||||| || |||||||||||   |||||||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  15316522 --atttgtgtcaaacctaaaagtagcctttatgcatttcatctgggctaaagacatatattttactttatgcaacaacctgagcataggagttacaccat 15316619  T
Q  566 tattaaacagcctatt-ttacactcattccataaaacccaagcacagag 613  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  15316620 tattaaacagcctattattacactcattccataaaactcaagcacagag 15316668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 75 - 273
Target Start/End: Original strand, 15310780 - 15310984
Alignment:
Q  75 ttgaattcttcctatcctttgtggaaaaaatggtgaaagataggaagaatttcacaccgaagtgataaggaatgtagaaatatttttacttactttggga 174  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| ||||||| ||||||||    
T  15310780 ttgaattcttcctatcctttgtggaaaaaatggtgaaagaaaggaagaatttcaccctgaagtgataaggaaagtagaaatatctttacttgctttggga 15310879  T
Q  175 ------atgtatttgtaacggaggagaagaaatagtgcgaaacnnnnnnnngaacgatcttaatttatatagacgatttaacatcaaaagccacattgtc 268  Q
          |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15310880 atgtatatgtatttgtaacggaggagaagaaatagtgcgaaacaaaaaaaagaacgatcttaatttatatagacgatttaacatcaaaagccacattgtc 15310979  T
Q  269 caaca 273  Q
     ||||    
T  15310980 aaaca 15310984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 75 - 273
Target Start/End: Original strand, 15316074 - 15316278
Alignment:
Q  75 ttgaattcttcctatcctttgtggaaaaaatggtgaaagataggaagaatttcacaccgaagtgataaggaatgtagaaatatttttacttactttggga 174  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| ||||||| ||||||||    
T  15316074 ttgaattcttcctatcctttgtggaaaaaatggtgaaagaaaggaagaatttcaccctgaagtgataaggaaagtagaaatatctttacttgctttggga 15316173  T
Q  175 ------atgtatttgtaacggaggagaagaaatagtgcgaaacnnnnnnnngaacgatcttaatttatatagacgatttaacatcaaaagccacattgtc 268  Q
          |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15316174 atgtatatgtatttgtaacggaggagaagaaatagtgcgaaacaaaaaaaagaacgatcttaatttatatagacgatttaacatcaaaagccacattgtc 15316273  T
Q  269 caaca 273  Q
     ||||    
T  15316274 aaaca 15316278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 434 - 604
Target Start/End: Original strand, 19232491 - 19232655
Alignment:
Q  434 aaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttacttt 533  Q
    ||||||||||||||| |||||||||||||||  |     |||||||| |||| |||||| |||||  ||||| |||  ||| ||||| ||  || |||||    
T  19232491 aaacattgtaaagggttcgaacaccacctatcca-----tgccaaacataaatgtagcctttttggctttcaaccagtctagagacacat--ttcacttt 19232583  T
Q  534 atctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaaccca 604  Q
    ||| ||||||||||| |||||||||||  |||||||||||| | |||| ||||||||||||||||| |||||    
T  19232584 atccaacaacctgagaataggagttacaacattattaaacaccttattattacactcattccataagaccca 19232655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 501 - 602
Target Start/End: Complemental strand, 17079673 - 17079571
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || ||||| || ||||  ||||||||||||    
T  17079673 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaagcctgttattacgttcattccataaa 17079574  T
Q  600 acc 602  Q
    |||    
T  17079573 acc 17079571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 578
Target Start/End: Complemental strand, 11061338 - 11061261
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcct 578  Q
    ||||| ||| ||||| ||||||||||| |||||||||||||||||| | |||||||||||  ||||||| || |||||    
T  11061338 tttcaaccaggctaaggacatatatttaactttatctaacaacctgggaataggagttacaacattattgaaaagcct 11061261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 15310321 - 15310368
Alignment:
Q  13 aatatggaacacaa-ggtaaatggaaaagaatacatcataaagtagaa 59  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  15310321 aatatggaacacaaaggtaaatggaaaagaatatatcataaagtagaa 15310368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 15315615 - 15315662
Alignment:
Q  13 aatatggaacacaa-ggtaaatggaaaagaatacatcataaagtagaa 59  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  15315615 aatatggaacacaaaggtaaatggaaaagaatatatcataaagtagaa 15315662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 17874313 - 17874238
Alignment:
Q  471 tgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctg 546  Q
    ||||||||||||||||  | |  |||||  ||||| ||| |||||||||| |||||| ||||||||||||||||||    
T  17874313 tgtgccaaacctaaaaacaacttttttggctttcaaccaggctaaagacaaatatttaactttatctaacaacctg 17874238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 546
Target Start/End: Original strand, 26526189 - 26526234
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctg 546  Q
    ||||| ||| |||||||||||| |||| ||||||||||||||||||    
T  26526189 tttcaaccatgctaaagacataaatttaactttatctaacaacctg 26526234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 557
Target Start/End: Original strand, 33019639 - 33019695
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagt 557  Q
    ||||| |||| ||||||||| ||||||||||||||| | ||||||| ||| ||||||    
T  33019639 tttcaaccaacctaaagacaaatattttactttatcaagcaacctgggcaaaggagt 33019695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 415 - 546
Target Start/End: Complemental strand, 10282383 - 10282257
Alignment:
Q  415 aaaccattaagttatgcctaaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagcta 514  Q
    ||||||||| || ||||| || ||||| || ||||||||||||||||||| |     |||||||||||||| | |||| |||||  ||||||||| ||||    
T  10282383 aaaccattatgtgatgcccaagcattgaaacgggctcgaacaccacctatct-----gtgccaaacctaaaggcagcctttttggctttcatccaggcta 10282289  T
Q  515 aagacatatattttactttatctaacaacctg 546  Q
    ||||||||||||| ||||||||||||||||||    
T  10282288 aagacatatatttcactttatctaacaacctg 10282257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 415 - 610
Target Start/End: Original strand, 4076852 - 4077043
Alignment:
Q  415 aaaccattaagttatgcctaaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagcta 514  Q
    |||||||||||| ||||| |||||||| || || || ||||||||| ||| |     || ||||||||||||  | || ||||   ||||| ||| ||||    
T  4076852 aaaccattaagtgatgcccaaacattgaaagggacttgaacaccacttatct-----gtaccaaacctaaaaacaacctttttagctttcaaccaggcta 4076946  T
Q  515 aagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcaca 610  Q
    ||||||||||||| ||||||| || ||||||| | |||| ||||||  |||| ||||| ||||| || |||| ||||||||||||||||||| ||||    
T  4076947 aagacatatatttaactttatttagcaacctgggaatagaagttacaacatttttaaagagcctgttattacgctcattccataaaacccaaacaca 4077043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 501 - 610
Target Start/End: Complemental strand, 29114031 - 29113921
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | || | ||||||  ||||||| || ||||| || ||||  || |||||||||    
T  29114031 tttcaaccaggctaaagacatatatttgactttatctaacaacctgggaattgaagttacaacattattgaaaagcctgttattacgttcgttccataaa 29113932  T
Q  600 acccaagcaca 610  Q
    |||||| ||||    
T  29113931 acccaaacaca 29113921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 501 - 560
Target Start/End: Original strand, 28060236 - 28060295
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttac 560  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||    
T  28060236 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttac 28060295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 610
Target Start/End: Complemental strand, 27941976 - 27941866
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||||||||||||||  ||||||||||| || ||||||||  |||||||||| |    |||||| ||||||||||| ||||  ||| |||||||     
T  27941976 tttcaaccaagctaaagacaagtattttactttgtccaacaacctaggcataggagtaatagaattattgaacagcctattattacgttcagtccataat 27941877  T
Q  600 acccaagcaca 610  Q
    |||||||||||    
T  27941876 acccaagcaca 27941866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 546
Target Start/End: Original strand, 34231357 - 34231402
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctg 546  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  34231357 tttcaaccaggctaaagacatatatttaactttatctaacaacctg 34231402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 560
Target Start/End: Complemental strand, 7459153 - 7459094
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttac 560  Q
    ||||| ||| |||||||||| |||||| |||||||||||||||||| | |||| ||||||    
T  7459153 tttcaaccaggctaaagacaaatatttaactttatctaacaacctgggaatagaagttac 7459094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 557
Target Start/End: Complemental strand, 39060224 - 39060168
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagt 557  Q
    ||||| ||||||||||||||  ||||||||||| || ||||||||  ||||||||||    
T  39060224 tttcaaccaagctaaagacaagtattttactttgtccaacaacctaggcataggagt 39060168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 471 - 604
Target Start/End: Original strand, 11155146 - 11155280
Alignment:
Q  471 tgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatta 570  Q
    |||||||||| |||| | |||| ||||| ||||||| ||||||||||||| |||||| |||||||||| ||||||  |||||||||||||  |||||||     
T  11155146 tgtgccaaacttaaaggcagcctttttggatttcatacaagctaaagacaaatatttcactttatctagcaacctaggcataggagttacaacattattg 11155245  T
Q  571 aacagcctatt-ttacactcattccataaaaccca 604  Q
    || |||||||| || | |||||||||||| |||||    
T  11155246 aaaagcctattattgcgctcattccataagaccca 11155280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 605
Target Start/End: Original strand, 17658489 - 17658594
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||||||||||  || |||| || ||||| || ||||  || |||||||||    
T  17658489 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaataggagttacaacaatattgaaaagcctgttattacgttcgttccataaa 17658588  T
Q  600 acccaa 605  Q
    ||||||    
T  17658589 acccaa 17658594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 475 - 569
Target Start/End: Original strand, 23679795 - 23679889
Alignment:
Q  475 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatt 569  Q
    ||||||||||||  | || |||||  ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  |||||||    
T  23679795 ccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattatt 23679889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 610
Target Start/End: Original strand, 26031150 - 26031260
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| |||||||||||| |||| |||||||||||||||||| | |||| ||| ||  |||||||||| || || || ||||  ||||||||||||    
T  26031150 tttcagccatgctaaagacataaatttaactttatctaacaacctgggaatagaagtaacaacattattaaagagtctgttattacgttcattccataaa 26031249  T
Q  600 acccaagcaca 610  Q
    || ||| ||||    
T  26031250 actcaaacaca 26031260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 574
Target Start/End: Complemental strand, 45256310 - 45256237
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 574  Q
    ||||| ||| ||||||||||||||||| | |||||||||||||||| | |||| ||||||  ||||||| ||||    
T  45256310 tttcaaccaggctaaagacatatatttaattttatctaacaacctgggaatagaagttaccacattattgaaca 45256237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 610
Target Start/End: Complemental strand, 46909149 - 46909039
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||||||| ||||||||||||||||| |||||||| |||| | || |||||||||||||  ||||||||||||||||||| || | |||| |||||||     
T  46909149 tttcatccaggctaaagacatatatttaactttatccaacagcatgggcataggagttacaacattattaaacagcctattgtttcgctcagtccataac 46909050  T
Q  600 acccaagcaca 610  Q
    |||||||||||    
T  46909049 acccaagcaca 46909039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 501 - 605
Target Start/End: Original strand, 50543879 - 50543984
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| |||||| ||| ||  ||||||| || | |||||| |||||||| |||||||||    
T  50543879 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggcatagaagtgacaacattattgaagaacctattattacactcgttccataaa 50543978  T
Q  600 acccaa 605  Q
    ||||||    
T  50543979 acccaa 50543984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 415 - 547
Target Start/End: Original strand, 46665057 - 46665184
Alignment:
Q  415 aaaccattaagttatgcctaaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagcta 514  Q
    ||||||||| || ||||| || ||||| || | |||||||||||||||||       |||||||||||||| | |||| | |||  ||||||||| ||||    
T  46665057 aaaccattatgtgatgcccaagcattgaaacgagctcgaacaccacctatcg-----gtgccaaacctaaaggcagccttcttggctttcatccaggcta 46665151  T
Q  515 aagacatatattttactttatctaacaacctga 547  Q
    ||||||||||||| |||||||||||||||||||    
T  46665152 aagacatatatttcactttatctaacaacctga 46665184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 415 - 605
Target Start/End: Original strand, 23818154 - 23818340
Alignment:
Q  415 aaaccattaagttatgcctaaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagcta 514  Q
    ||||||||| || ||||| |  ||||| || ||||||||||||||||||| |     |||||||||||||| | |||| | |||  ||| ||||| || |    
T  23818154 aaaccattatgtgatgcccatgcattgaaacgggctcgaacaccacctatat-----gtgccaaacctaaaggcagccttcttggcttttatccaggcaa 23818248  T
Q  515 aagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaa 605  Q
    ||||||||||||| |||||||||||||||||| | ||||| ||| |  ||||||| || | |||||| || | |||||||||||| ||||||    
T  23818249 aagacatatatttcactttatctaacaacctgggaataggggttgcaacattattgaaaaacctattattgcgctcattccataagacccaa 23818340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 475 - 605
Target Start/End: Complemental strand, 24124349 - 24124218
Alignment:
Q  475 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 574  Q
    ||||||||||||  | || |||||  ||||| ||| ||||||||||||||||| ||||||||||||||| || | |||  ||||||  |||||||||| |    
T  24124349 ccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacatgggaatataagttacaacattattaaaga 24124250  T
Q  575 gcctatt-ttacactcattccataaaacccaa 605  Q
    | || || |||| |||||||||||||||||||    
T  24124249 gtctgttattacgctcattccataaaacccaa 24124218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 494 - 610
Target Start/End: Original strand, 47536919 - 47537036
Alignment:
Q  494 ttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcatt 592  Q
    |||||| ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || || || || ||||  || ||    
T  47536919 ttttgcctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaagtctgttattacgttcgtt 47537018  T
Q  593 ccataaaacccaagcaca 610  Q
    ||||||||||||| ||||    
T  47537019 ccataaaacccaaacaca 47537036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 578
Target Start/End: Complemental strand, 32093399 - 32093322
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcct 578  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || |||||    
T  32093399 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaagcct 32093322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 11639624 - 11639692
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatt 569  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  |||||||    
T  11639624 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattatt 11639692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 604
Target Start/End: Original strand, 26845503 - 26845633
Alignment:
Q  475 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 574  Q
    ||||||||||||  | || |||||  ||||| ||| |||||||||||| |||| ||||||| |||||||||||| |||| ||| ||  ||||||| || |    
T  26845503 ccaaacctaaaaacaacctttttggctttcaaccatgctaaagacataaatttaactttatgtaacaacctgagaatagaagtaacaacattattgaaga 26845602  T
Q  575 gcctatt-ttacactcattccataaaaccca 604  Q
    | || || ||||  |||||||||||||||||    
T  26845603 gtctgttattacgttcattccataaaaccca 26845633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 605
Target Start/End: Complemental strand, 43122177 - 43122043
Alignment:
Q  472 gtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaa 571  Q
    |||||||||||||| | |||| | |||  ||||||| | ||||||||||||||||| |||||||| ||||||||  | ||||| |||||  ||||||| |    
T  43122177 gtgccaaacctaaaggcagccttcttggctttcatctaggctaaagacatatatttcactttatccaacaacctaggaataggggttacaacattattga 43122078  T
Q  572 acagcctatt-ttacactcattccataaaacccaa 605  Q
    | | |||||| || | |||||| ||||| ||||||    
T  43122077 aaaacctattattgcgctcatttcataagacccaa 43122043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 605
Target Start/End: Complemental strand, 33121799 - 33121694
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| || | |||| ||||||   |||||| || ||||| || ||||  || |||||||||    
T  33121799 tttcaaccaggctaaagacatatatttaactttatctaacaacttgggaatagaagttacaatattattgaaaagcctgttgttacgttcgttccataaa 33121700  T
Q  600 acccaa 605  Q
    ||||||    
T  33121699 acccaa 33121694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 8695362 - 8695314
Alignment:
Q  512 ctaaagacatatattttactttatctaacaacctgagcataggagttac 560  Q
    |||||||||||||||| |||||||||||||||||| | |||| ||||||    
T  8695362 ctaaagacatatatttaactttatctaacaacctgggaatagaagttac 8695314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 9047249 - 9047201
Alignment:
Q  512 ctaaagacatatattttactttatctaacaacctgagcataggagttac 560  Q
    |||||||||||||||| |||||||||||||||||| | |||| ||||||    
T  9047249 ctaaagacatatatttaactttatctaacaacctgggaatagaagttac 9047201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 415 - 610
Target Start/End: Original strand, 38898546 - 38898737
Alignment:
Q  415 aaaccattaagttatgcctaaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagcta 514  Q
    |||| |||| || ||||| || ||||| || |||||||||||||| ||||||     ||| |||||||||| | | || | |||  ||||||| | ||||    
T  38898546 aaactattatgtgatgcccaagcattgaaacgggctcgaacaccagctattt-----gtgtcaaacctaaaggcaaccttcttgactttcatctaggcta 38898640  T
Q  515 aagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcaca 610  Q
    ||||||||||||| |||||||||||||| |||   ||||| |||||  ||||||| || | |||||| || | |||||| ||||| |||||| ||||    
T  38898641 aagacatatatttcactttatctaacaatctggaaataggggttacaacattattgaaaaacctattattgcgctcatttcataagacccaaacaca 38898737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 570
Target Start/End: Complemental strand, 25341842 - 25341747
Alignment:
Q  475 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatta 570  Q
    ||||||||||||  | || |||||  ||||| ||| ||||||||||||||||| | ||||||||||||| || | |||| ||||||  ||||||||    
T  25341842 ccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaattttatctaacaacttgggaatagaagttaccacattatta 25341747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 572
Target Start/End: Original strand, 36635096 - 36635167
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaa 572  Q
    ||||| ||| ||||||||||||||||| ||||| | |||||||||| | |||| ||||||  ||||||||||    
T  36635096 tttcaaccaggctaaagacatatatttaactttgtttaacaacctgggaatagaagttacaacattattaaa 36635167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 581
Target Start/End: Complemental strand, 27925544 - 27925464
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt 581  Q
    ||||||||||  ||| |||||||| ||||||||||| |||||||||   |||||||||||   ||| ||| ||||||||||    
T  27925544 tttcatccaacataatgacatatactttactttatccaacaacctggtaataggagttacaagattgttatacagcctatt 27925464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 557
Target Start/End: Complemental strand, 54558899 - 54558855
Alignment:
Q  513 taaagacatatattttactttatctaacaacctgagcataggagt 557  Q
    |||||||| |||||||||||||||||||||| |  ||||||||||    
T  54558899 taaagacaaatattttactttatctaacaacttaggcataggagt 54558855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 426 - 610
Target Start/End: Complemental strand, 7397263 - 7397084
Alignment:
Q  426 ttatgcctaaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatat 525  Q
    ||||||| ||||||||||| ||| |||||||||||||||       ||||||||  |||| |||||| ||||| |||||| ||| | ||  |||| |||     
T  7397263 ttatgcccaaacattgtaa-gggttcgaacaccacctatcc-----gtgccaaatataaacgtagcctttttggatttcaaccatgttagggacacataa 7397170  T
Q  526 tttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaagcaca 610  Q
    || |||||||| ||||||||| | |||||||||||  |||||||||||| |||||| ||||||||||||||||| |||||| ||||    
T  7397169 ttcactttatccaacaacctgggaataggagttacaacattattaaacaccctattattacactcattccataagacccaaacaca 7397084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 471 - 598
Target Start/End: Complemental strand, 21335734 - 21335606
Alignment:
Q  471 tgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatta 570  Q
    |||||||||| |||| | | || |||||| ||||| ||| ||||||||||||||||| | |||||||| ||||||| | ||| |||||||  |||||||     
T  21335734 tgtgccaaacataaaggcatcctttttgcctttcaaccaggctaaagacatatatttcagtttatctagcaacctgggaataagagttaccacattattg 21335635  T
Q  571 aacagcctatt-ttacactcattccataa 598  Q
    || |||||||| || | ||||||||||||    
T  21335634 aaaagcctattcttgcgctcattccataa 21335606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 41181842 - 41181973
Alignment:
Q  475 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 574  Q
    ||||||||||||  | || |||||  ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || |    
T  41181842 ccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaa 41181941  T
Q  575 gcctatt-ttacactcattccataaaacccaa 605  Q
    | || || ||||  || |||||||||||||||    
T  41181942 gtctgttattacgttcgttccataaaacccaa 41181973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 560
Target Start/End: Complemental strand, 30111432 - 30111347
Alignment:
Q  475 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttac 560  Q
    ||||||||||||  | || |||||  ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||    
T  30111432 ccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacctggggatagaagttac 30111347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 598
Target Start/End: Original strand, 12173836 - 12173964
Alignment:
Q  471 tgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatta 570  Q
    ||||||||||||||| | | || | |||  ||||||| | ||||||||||||||||| |||||||||||||||||| | |||||  ||||  |||||||     
T  12173836 tgtgccaaacctaaaggcaaccttcttggctttcatctaggctaaagacatatatttcactttatctaacaacctgggaatagggcttacaacattattg 12173935  T
Q  571 aacagcctatt-ttacactcattccataa 598  Q
    || | |||||| || | ||||||||||||    
T  12173936 aaaaacctattattgcgctcattccataa 12173964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 610
Target Start/End: Original strand, 26720357 - 26720467
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| |||||||||||| |||| |||||||||||||||||| | |||| ||| ||  ||||||| || || || || ||||  ||||||||||||    
T  26720357 tttcaaccatgctaaagacataaatttaactttatctaacaacctgggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaa 26720456  T
Q  600 acccaagcaca 610  Q
    |||||| ||||    
T  26720457 acccaaacaca 26720467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 610
Target Start/End: Complemental strand, 41061626 - 41061516
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| || ||||||||| |||| |||||||||||||||||||| |||| ||| ||  ||||||| || || || || ||||  ||||||||||||    
T  41061626 tttcaaccatgcaaaagacataaatttaactttatctaacaacctgagaatagaagtaacaacattattgaagagtctgttattacgttcattccataaa 41061527  T
Q  600 acccaagcaca 610  Q
    |||||| ||||    
T  41061526 acccaaacaca 41061516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 569
Target Start/End: Complemental strand, 9903747 - 9903679
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatt 569  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| || | |||| ||||||  |||||||    
T  9903747 tttcaaccaggctaaagacatatatttaactttatctaacaacttgggaatagaagttacaacattatt 9903679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 17707654 - 17707698
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacct 545  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||    
T  17707654 tttcaaccaggctaaagacatatatttaactttatctaacaacct 17707698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 572
Target Start/End: Original strand, 49968985 - 49969056
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaa 572  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||  || | |||| ||||||  ||||||||||    
T  49968985 tttcaaccaggctaaagacatatatttaactttatctaacaagttgggaatagaagttacaacattattaaa 49969056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 578
Target Start/End: Complemental strand, 47107162 - 47107085
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcct 578  Q
    ||||| ||| ||||||||||||||||| | |||||| ||||||||| | |||| || |||  ||||||| ||||||||    
T  47107162 tttcagccaggctaaagacatatatttaattttatcaaacaacctgggaatagaagataccacattattgaacagcct 47107085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 10711595 - 10711551
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacct 545  Q
    ||||| ||| ||||||||||||||||| || ||||||||||||||    
T  10711595 tttcaaccaggctaaagacatatatttaaccttatctaacaacct 10711551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 557
Target Start/End: Original strand, 43810468 - 43810524
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagt 557  Q
    ||||| |||| |||||||||  |||||||||||||| ||||||||  ||||||||||    
T  43810468 tttcaaccaacctaaagacaagtattttactttatccaacaacctaggcataggagt 43810524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 40089971 - 40090102
Alignment:
Q  475 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 574  Q
    ||||||||||||  | || |||||  ||||| ||||||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || |    
T  40089971 ccaaacctaaaaccaacctttttggctttcaaccaagctaaagacatatatttgactttatctaacaacctgggaatagaagttacaacattattgaaaa 40090070  T
Q  575 gcctatt-ttacactcattccataaaacccaa 605  Q
    |||| || |||| ||| ||||||| |||||||    
T  40090071 gcctgttattacgctcgttccatagaacccaa 40090102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 471 - 569
Target Start/End: Original strand, 20591764 - 20591862
Alignment:
Q  471 tgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatt 569  Q
    |||||||||| |||| | |||| ||||| |||||||||| |||||||||| |||||| |||||||||| ||| ||  |||||||||||||  |||||||    
T  20591764 tgtgccaaacttaaaggcagcctttttggatttcatccaggctaaagacaaatatttcactttatctagcaaactaggcataggagttacaacattatt 20591862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 475 - 610
Target Start/End: Original strand, 4922866 - 4923002
Alignment:
Q  475 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 574  Q
    ||||||||||||  | ||||||||  ||||| ||| ||||| |||||| |||| |||||||||||||||||| | |||| ||||||  ||||||| || |    
T  4922866 ccaaacctaaaaacaacccttttggctttcaaccatgctaaggacataaatttaactttatctaacaacctgggaatagaagttacaacattattgaaga 4922965  T
Q  575 gcctatt-ttacactcattccataaaacccaagcaca 610  Q
    |||| || ||||  || ||||||||||||||| ||||    
T  4922966 gcctgttattacgttcgttccataaaacccaaacaca 4923002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 578
Target Start/End: Complemental strand, 4416182 - 4416105
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcct 578  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || |||||    
T  4416182 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaagcct 4416105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 605
Target Start/End: Complemental strand, 34874921 - 34874816
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| |||| |||| ||||||  ||||||| ||  || | || ||||  ||||||||||||    
T  34874921 tttcaaccaggctaaagacatatatttaactttatctaacaacttgagaatagaagttacaacattattgaaaggcttgttattacgttcattccataaa 34874822  T
Q  600 acccaa 605  Q
    ||||||    
T  34874821 acccaa 34874816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 610
Target Start/End: Original strand, 6048856 - 6048991
Alignment:
Q  475 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 574  Q
    ||||||||||||  | || |||||  ||||| ||| ||||||||||||||||| | |||||||||||||||| | |||| ||||||  ||||||| ||||    
T  6048856 ccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaattttatctaacaacctg-gaatagaagttaccacattattgaaca 6048954  T
Q  575 gcctat-tttacactcattccataaaacccaagcaca 610  Q
     |||||  || |  |||||||||||||||||| ||||    
T  6048955 tcctatcattgcgttcattccataaaacccaaacaca 6048991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 610
Target Start/End: Complemental strand, 20209227 - 20209091
Alignment:
Q  475 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 574  Q
    ||||||||||||  | || |||||  ||||| ||| |||||||||||| |||| |||||||||||||||||||| |||| ||| ||  ||||||| || |    
T  20209227 ccaaacctaaaaacaacctttttggctttcaaccatgctaaagacataaatttaactttatctaacaacctgagaatagaagtaacaacattattgaaga 20209128  T
Q  575 gcctatt-ttacactcattccataaaacccaagcaca 610  Q
    | || || |||   |||||||||||||||||| ||||    
T  20209127 gtctgttattaggttcattccataaaacccaaacaca 20209091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 605
Target Start/End: Complemental strand, 7001237 - 7001142
Alignment:
Q  511 gctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaa 605  Q
    ||||||||||||||||| ||||| ||||||||| || | |||| ||||||  ||||||| || ||||| || ||||  || |||||||||||||||    
T  7001237 gctaaagacatatatttaactttctctaacaacttgggaatagaagttacaacattattgaaaagcctgttattacgttcgttccataaaacccaa 7001142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 415 - 605
Target Start/End: Original strand, 18935245 - 18935431
Alignment:
Q  415 aaaccattaagttatgcctaaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagcta 514  Q
    |||||||||||| ||||| |||||||| || || || |||||||| |||| |     || ||||||||||||  | |  |||||  ||||| ||| ||||    
T  18935245 aaaccattaagtgatgcccaaacattgaaagggacttgaacaccaactatct-----gtaccaaacctaaaaacaacatttttggctttcaaccaggcta 18935339  T
Q  515 aagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaa 605  Q
    ||||| ||||||| |||||||||||||||||| | |||| ||||||  |||||||||| || || || |||| |||||||||||||||||||    
T  18935340 aagacttatatttaactttatctaacaacctgggaatagaagttacaacattattaaagagtctgttattacgctcattccataaaacccaa 18935431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 605
Target Start/End: Complemental strand, 12881167 - 12881062
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || ||||| || ||||  || |||||||||    
T  12881167 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaagcctgttattacgttcgttccataaa 12881068  T
Q  600 acccaa 605  Q
    ||||||    
T  12881067 acccaa 12881062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 605
Target Start/End: Original strand, 20395254 - 20395359
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| ||||||||||||||||| |||||||||||||| ||| | |||| ||||||  ||||||| || |||||||| ||||  || |||||||||    
T  20395254 tttcaaccaggctaaagacatatatttaactttatctaacaatctgggaatagaagttacaacattattgaaaagcctattattacgttcgttccataaa 20395353  T
Q  600 acccaa 605  Q
    ||||||    
T  20395354 acccaa 20395359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 501 - 560
Target Start/End: Original strand, 42823102 - 42823161
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttac 560  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||    
T  42823102 tttcaaccaggctaaagacatatatttaactttatctaacaacctgagaatagaagttac 42823161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 605
Target Start/End: Complemental strand, 53487425 - 53487330
Alignment:
Q  511 gctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaa 605  Q
    ||||||||||||||||| |||||||||||||||||| | |||| ||| ||  ||||||| || ||||| || ||||  ||||||||||||||||||    
T  53487425 gctaaagacatatatttaactttatctaacaacctgggaatagaagtaacaacattattgaaaagcctgttattacgttcattccataaaacccaa 53487330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 501 - 581
Target Start/End: Original strand, 42777896 - 42777976
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt 581  Q
    ||||| ||| ||||||||||||||||| ||||| |||||||||||| | |||| ||||||  ||||||| || ||||||||    
T  42777896 tttcaaccaggctaaagacatatatttgactttgtctaacaacctgggaatagaagttacaacattattgaaaagcctatt 42777976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 605
Target Start/End: Complemental strand, 30274294 - 30274189
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| ||||||||||||||||| |||||||||||||| ||| | |||| ||||||  ||||||| || | ||| || ||||  || |||||||||    
T  30274294 tttcaaccaggctaaagacatatatttaactttatctaacaatctgggaatagaagttacaacattattgaaaaacctgttattacgttcgttccataaa 30274195  T
Q  600 acccaa 605  Q
    ||||||    
T  30274194 acccaa 30274189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 569
Target Start/End: Complemental strand, 18107038 - 18106970
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatt 569  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| || | |||| ||||||  |||||||    
T  18107038 tttcaaccaggctaaagacatatatttaactttatctaacaacttgggaatagaagttacaacattatt 18106970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 31863924 - 31863992
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatt 569  Q
    ||||| ||| ||||||||||||||||| ||||||||||| |||||| | |||| ||||||  |||||||    
T  31863924 tttcaaccaggctaaagacatatatttaactttatctaataacctgggaatagaagttacaacattatt 31863992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 578
Target Start/End: Original strand, 449683 - 449786
Alignment:
Q  475 ccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaaca 574  Q
    |||||||||||| || || | |||  ||||| ||| |||||||| |||||||| |||||||||||||| ||| | |||| ||||||  ||||||| || |    
T  449683 ccaaacctaaaaataaccttattggctttcaaccaggctaaagatatatatttaactttatctaacaaactgggaatagaagttacaacattattgaaaa 449782  T
Q  575 gcct 578  Q
    ||||    
T  449783 gcct 449786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 560
Target Start/End: Complemental strand, 10563791 - 10563732
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttac 560  Q
    ||||| ||| |||||||||| |||||| |||||||||||||||||| | |||| ||||||    
T  10563791 tttcaaccaggctaaagacaaatatttaactttatctaacaacctgggaatagaagttac 10563732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 560
Target Start/End: Original strand, 53779703 - 53779762
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttac 560  Q
    ||||| ||| |||||||||| |||||| |||||||||||||||||| | |||| ||||||    
T  53779703 tttcaaccaggctaaagacaaatatttaactttatctaacaacctgggaatagaagttac 53779762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 512 - 605
Target Start/End: Complemental strand, 34322790 - 34322696
Alignment:
Q  512 ctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaaacccaa 605  Q
    |||||||||||||||| |||||||||||||||||  | |||| ||||||  ||||||| || || || || ||||  || |||||||||||||||    
T  34322790 ctaaagacatatatttaactttatctaacaacctaggaatagaagttacaacattattgaaaagtctgttattacgttcgttccataaaacccaa 34322696  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 560
Target Start/End: Complemental strand, 29213453 - 29213404
Alignment:
Q  511 gctaaagacatatattttactttatctaacaacctgagcataggagttac 560  Q
    |||||||||| |||||| |||||||||||||||||| | |||| ||||||    
T  29213453 gctaaagacaaatatttaactttatctaacaacctgggaatagaagttac 29213404  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 557
Target Start/End: Complemental strand, 29554222 - 29554166
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagt 557  Q
    ||||| ||||||||||||||  ||||||||||| || ||||||||  ||||||||||    
T  29554222 tttcaaccaagctaaagacaagtattttactttgtccaacaacctaggcataggagt 29554166  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 468 - 581
Target Start/End: Original strand, 11026725 - 11026838
Alignment:
Q  468 atttgtgccaaacctaaaagtagcccttttgcatttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccatta 567  Q
    ||||||||||||| |||| | |||| ||||| ||||||||||  ||||||||| |||||| |||||||||| |||| |  |||||||||||||  |||||    
T  11026725 atttgtgccaaacttaaaggcagcctttttggatttcatccagactaaagacaaatatttaactttatctatcaacttaggcataggagttacaacatta 11026824  T
Q  568 ttaaacagcctatt 581  Q
    || || ||||||||    
T  11026825 ttgaaaagcctatt 11026838  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 7075770 - 7075838
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatt 569  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||  |||||||    
T  7075770 tttcaaccaggctaaagacatatatttaactttatctaacaacctgagcatagaagttacaacattatt 7075838  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 553
Target Start/End: Original strand, 30273577 - 30273710
Alignment:
Q  415 aaaccattaagttatgcctaaacattgtaaagggctcgaacaccacctatttaatttgtgccaaacctaaaagtagcccttttgcatttcatccaagcta 514  Q
    ||||||||||   |||||||||||||| ||||| || || |||||||||| |     || ||||||||||||  | || |||||  ||||| ||| ||||    
T  30273577 aaaccattaaacgatgcctaaacattggaaaggacttgagcaccacctatct-----gtaccaaacctaaaaacaacctttttgtctttcaaccatgcta 30273671  T
Q  515 aagacatatattttactttatctaacaacctgagcatag 553  Q
    |||||||| |||| |||||||||||||||||||| ||||    
T  30273672 aagacatacatttaactttatctaacaacctgagaatag 30273710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 1379740 - 1379808
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatt 569  Q
    ||||| ||||||||||||||||||||| ||||| ||||||| |||| | |||| ||||||  |||||||    
T  1379740 tttcaaccaagctaaagacatatatttaactttgtctaacagcctgggaatagaagttacaacattatt 1379808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 569
Target Start/End: Complemental strand, 3000230 - 3000162
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattatt 569  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| || | |||| ||||||  |||||||    
T  3000230 tttcaaccaggctaaagacatatatttaactttatctaacaacttgggaatagaagttacaacattatt 3000162  T

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Target: scaffold0308 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 605
Target Start/End: Original strand, 11736 - 11841
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||||| |||  ||||||  ||||||| || ||| | || ||||  || |||||||||    
T  11736 tttcaaccaggctaaagacatatatttaactttatctaacaacctgagaataaaagttacaacattattgaaaagcatgttattacgttcgttccataaa 11835  T
Q  600 acccaa 605  Q
    ||||||    
T  11836 acccaa 11841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 605
Target Start/End: Original strand, 181787 - 181892
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||| || | ||| || ||||  || |||||||||    
T  181787 tttcaaccaggctaaagacatatatttaactttatctaacaacctgggaatagaagttacaacattattgaaaaccctgttattacgttcgttccataaa 181886  T
Q  600 acccaa 605  Q
    ||||||    
T  181887 acccaa 181892  T

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Target: scaffold0179 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 610
Target Start/End: Original strand, 7186 - 7296
Alignment:
Q  501 tttcatccaagctaaagacatatattttactttatctaacaacctgagcataggagttacgccattattaaacagcctatt-ttacactcattccataaa 599  Q
    ||||| ||| |||||||||||| |||| |||||||||||||||||| | |||| ||| ||  ||||||| || || || || ||||  ||||||||||||    
T  7186 tttcaaccatgctaaagacataaatttaactttatctaacaacctgggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaa 7285  T
Q  600 acccaagcaca 610  Q
    |||||| ||||    
T  7286 acccaaacaca 7296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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