View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13720_low_3 (Length: 461)

Name: NF13720_low_3
Description: NF13720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13720_low_3
NF13720_low_3
[»] chr7 (12 HSPs)
chr7 (9-446)||(32727174-32727616)
chr7 (6-432)||(36221643-36222069)
chr7 (9-406)||(36217678-36218075)
chr7 (9-446)||(35981617-35982054)
chr7 (9-446)||(36003029-36003466)
chr7 (45-428)||(35977087-35977470)
chr7 (45-428)||(35998499-35998882)
chr7 (14-428)||(35946393-35946807)
chr7 (14-428)||(35957601-35958015)
chr7 (14-435)||(35938939-35939364)
chr7 (168-325)||(35952171-35952328)
chr7 (14-130)||(35952032-35952148)
[»] chr1 (2 HSPs)
chr1 (9-431)||(18125316-18125738)
chr1 (18-434)||(18117672-18118088)
[»] chr2 (1 HSPs)
chr2 (13-441)||(26328676-26329104)
[»] chr4 (3 HSPs)
chr4 (147-372)||(49352169-49352394)
chr4 (72-109)||(7128578-7128615)
chr4 (72-109)||(7721852-7721889)


Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 9 - 446
Target Start/End: Original strand, 32727174 - 32727616
Alignment:
Q  9 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32727174 aatatccacttatttaaatcatattttgagaataaggaacttcgtaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 32727273  T
Q  109 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaa-----gataaacaatcttctagggaaagaccttccaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||| |||| |||||||||||||||    
T  32727274 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaattaaagataaacaatctcctagagaaagaccttccaaa 32727373  T
Q  204 acgtacgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatca 303  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  32727374 acgtacgagggaatagtacccatcattgaagcaaatgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatcaaatctatca 32727473  T
Q  304 actcaatccattttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32727474 actcaatccattttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctc 32727573  T
Q  404 aatatcaaagttgttgatgttttcttggtgagcaagagaaaca 446  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32727574 aatatcaaagttgttgatgttttcttggtgagcaagagaaaca 32727616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 6 - 432
Target Start/End: Complemental strand, 36222069 - 36221643
Alignment:
Q  6 acgaatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgc 105  Q
    |||||||||||||||||||||||| ||||||| || |  ||||||||||||||| | ||||  || ||||| || ||||||||||||||||||||||| |    
T  36222069 acgaatatccacttatttaaatcaaattttgataacagagaacttcctaatgttttgacagccagcggaactccagcacattttttcacaatttcttttc 36221970  T
Q  106 caatatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaac 205  Q
    |||| | ||| |||| || ||||||  || |||| || || |||||||||||||| ||||||||| | |||||    ||| | ||||||||||||||||     
T  36221969 caatctccactagatttgaatatttttcttcttctccgtctttaaatgcccatttcacaaacaaatacaaacagctctcttgcgaaagaccttccaaaat 36221870  T
Q  206 gtacgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaac 305  Q
     ||||| |||| ||||| |||||| |||||||||||||| |||| |||||||||||||| ||| ||| || || |||| ||||| ||  ||| || ||||    
T  36221869 atacgaaggaacagtactcatcatggaagcaattgagttactacatgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaac 36221770  T
Q  306 tcaatccattttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaa 405  Q
    ||||||||||||||||| ||||||||||||||||| |||||||  || | |||||| ||||||| |||||||||||||  |||| ||||||| |||||||    
T  36221769 tcaatccattttgcacggtcatcattccatatatcatctaggatgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaa 36221670  T
Q  406 tatcaaagttgttgatgttttcttggt 432  Q
    ||||||| | ||| |||| ||||||||    
T  36221669 tatcaaaatggttaatgtcttcttggt 36221643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 36218075 - 36217678
Alignment:
Q  9 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 108  Q
    |||| |||||||| ||||||| |||||||||| |  ||||||||||  ||||||||||  || ||||| || ||||||||||||||||||||||| ||||    
T  36218075 aataaccacttatctaaatcaaattttgagaacagagaacttcctaccgttctcacagccagcggaactccagcacattttttcacaatttcttttccaa 36217976  T
Q  109 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta 208  Q
    | | ||| |||| |||||||||  || |||| || ||||| ||||||||||| ||||||| ||| |||||||| ||||  ||||||||||||||||| ||    
T  36217975 tctccactagatttggatatttttcttcttctccatccttgaatgcccatttcacaaacagagacaaacaatcctctaacgaaagaccttccaaaacata 36217876  T
Q  209 cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca 308  Q
    ||| |||| |||||||||||| ||||||| ||||||||||||||| |||||||| ||||| |||||| ||||||| ||||| ||  |||||  |||||||    
T  36217875 cgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataattttacttcctactgcaccaactttgatcaaatcttccaactca 36217776  T
Q  309 atccattttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaat 406  Q
    |||||||||||||||||||||||||||| ||| ||||| || || | |||||| || ||||  |||||| |||||  | || ||||||| ||||||||    
T  36217775 atccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggccagatagtttacgtcttagatgaatttgtagttgctcaat 36217678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 9 - 446
Target Start/End: Original strand, 35981617 - 35982054
Alignment:
Q  9 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 108  Q
    |||| ||||||||||||||||   ||||| || | |||||||||||||||| | ||||  |||||||| |||  ||||||||||||||||||||| || |    
T  35981617 aatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaactcctcgacattttttcacaatttcttttccga 35981716  T
Q  109 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta 208  Q
    ||| ||| |||| |||||||||   | ||||||||||||||||||||||||||||||||| |||||||||||| | | | |||||||||| |||||  ||    
T  35981717 tatccactagatttggatattttgtttcttcaccttccttaaatgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagata 35981816  T
Q  209 cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca 308  Q
    ||  |||| |  ||||||||| |||| ||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||| ||  ||||| ||||||||    
T  35981817 cggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactttgatcaaatctttcaactca 35981916  T
Q  309 atccattttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaatat 408  Q
    |||||||||||||||||||||||||  | ||| || |  ||||| |||||||| || |  | |||||||||||||  |||| ||||||| ||||||||||    
T  35981917 atccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtctggaaagtttatgtcttagacgagtttgtagttgctcaatat 35982016  T
Q  409 caaagttgttgatgttttcttggtgagcaagagaaaca 446  Q
    | |||||||| | |||||| ||||||||||||| ||||    
T  35982017 ctaagttgttaaggttttcctggtgagcaagaggaaca 35982054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 9 - 446
Target Start/End: Original strand, 36003029 - 36003466
Alignment:
Q  9 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 108  Q
    |||| ||||||||||||||||   ||||| || | |||||||||||||||| | ||||  |||||||| |||  ||||||||||||||||||||| || |    
T  36003029 aatacccacttatttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaactcctcgacattttttcacaatttcttttccga 36003128  T
Q  109 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta 208  Q
    ||| ||| |||| |||||||||   | ||||||||||||||||||||||||||||||||| |||||||||||| | | | |||||||||| |||||  ||    
T  36003129 tatccactagatttggatattttgtttcttcaccttccttaaatgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagata 36003228  T
Q  209 cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca 308  Q
    ||  |||| |  ||||||||| |||| ||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||| ||  ||||| ||||||||    
T  36003229 cggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactttgatcaaatctttcaactca 36003328  T
Q  309 atccattttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaatat 408  Q
    |||||||||||||||||||||||||  | ||| || |  ||||| |||||||| || |  | |||||||||||||  |||| ||||||| ||||||||||    
T  36003329 atccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtctggaaagtttatgtcttagacgagtttgtagttgctcaatat 36003428  T
Q  409 caaagttgttgatgttttcttggtgagcaagagaaaca 446  Q
    | |||||||| | |||||| ||||||||||||| ||||    
T  36003429 ctaagttgttaaggttttcctggtgagcaagaggaaca 36003466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 45 - 428
Target Start/End: Original strand, 35977087 - 35977470
Alignment:
Q  45 gaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacgagatctggatatttaactacttcacctt 144  Q
    ||||||||||||||||||||||  || |||||||||   || ||||| ||||||||||| || || |  || |||| |||||||||   | |||| ||||    
T  35977087 gaacttcctaatgttctcacagctagcggaaccccttggcacttttttacaatttcttttccgatctctactagatttggatattttttttcttcgcctt 35977186  T
Q  145 ccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagtt 244  Q
    |||| || |||||||||||||||| |||||||||||| | | | |||||||||| |||||  || |  |||| |  ||||||||| ||||||||||||||    
T  35977187 ccttgaacgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagtt 35977286  T
Q  245 gctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatcatcattccatatatcgtct 344  Q
     |||||||| ||||| || ||||||||||||| |||||| ||||||||  ||||| |||| |||| ||| ||||||||||||||||||||||  || |||    
T  35977287 actacgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatct 35977386  T
Q  345 aggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaatatcaaagttgttgatgttttct 428  Q
    |  || |  |||||||| ||||||| |||||| |||||   |||||||  ||| ||| ||||||| ||||||||||||||||||    
T  35977387 aacacgactaaaaacttttgaccagaaagtttttgtctgagacgacttactagttgcacaatatctaagttgttgatgttttct 35977470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 45 - 428
Target Start/End: Original strand, 35998499 - 35998882
Alignment:
Q  45 gaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacgagatctggatatttaactacttcacctt 144  Q
    ||||||||||||||||||||||  || |||||||||   || ||||| ||||||||||| || || |  || |||| |||||||||   | |||| ||||    
T  35998499 gaacttcctaatgttctcacagctagcggaaccccttggcacttttttacaatttcttttccgatctctactagatttggatattttttttcttcgcctt 35998598  T
Q  145 ccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagtt 244  Q
    |||| || |||||||||||||||| |||||||||||| | | | |||||||||| |||||  || |  |||| |  ||||||||| ||||||||||||||    
T  35998599 ccttgaacgcccatttgacaaacagagataaacaatcctttggagaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagtt 35998698  T
Q  245 gctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatcatcattccatatatcgtct 344  Q
     |||||||| ||||| || ||||||||||||| |||||| ||||||||  ||||| |||| |||| ||| ||||||||||||||||||||||  || |||    
T  35998699 actacgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatct 35998798  T
Q  345 aggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaatatcaaagttgttgatgttttct 428  Q
    |  || |  |||||||| ||||||| |||||| |||||   |||||||  ||| ||| ||||||| ||||||||||||||||||    
T  35998799 aacacgactaaaaacttttgaccagaaagtttttgtctgagacgacttactagttgcacaatatctaagttgttgatgttttct 35998882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 14 - 428
Target Start/End: Original strand, 35946393 - 35946807
Alignment:
Q  14 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 113  Q
    ||||||| ||| |||| | |||||||| |  |||||| ||||||||||||| |  ||||||||||||   |||||||||||||||||||| || ||        
T  35946393 ccacttacttatatcaaagtttgagaagagagaacttgctaatgttctcacggctagtggaaccccttggcattttttcacaatttcttttcctatcgct 35946492  T
Q  114 acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagg 213  Q
    || |||| |||||| ||   | ||||||||||||| ||||||||||||||||||| ||| |||||||  | | | ||||||||||||||||  || |  |    
T  35946493 actagatttggatactttttttcttcaccttccttgaatgcccatttgacaaacagagacaaacaattctttggagaaagaccttccaaaatatatggag 35946592  T
Q  214 gaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcca 313  Q
    ||| |  ||||||||| |||||||||| ||| || ||||| ||||| || ||||||||||||| |||||| ||||||||  ||||| |||| |||| |||    
T  35946593 gaacatcacccatcatcgaagcaattgcgttactgcgtgttgtcaccataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagcca 35946692  T
Q  314 ttttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaatatcaaag 413  Q
     ||||||||||||||||||||||  || ||||  || |  |||||||| ||||||| |||||| ||||||  |||||||  ||| ||| ||||||| |||    
T  35946693 ctttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaagtttttgtcttagacgacttactagttgcacaatatctaag 35946792  T
Q  414 ttgttgatgttttct 428  Q
    |||||| ||||||||    
T  35946793 ttgttggtgttttct 35946807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 14 - 428
Target Start/End: Original strand, 35957601 - 35958015
Alignment:
Q  14 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 113  Q
    ||||||| ||| |||| | |||||||| |  |||||| |||| |||||||| |  ||||||||||||   |||||||||||||||||||| ||||| |      
T  35957601 ccacttacttatatcaaagtttgagaagagagaacttgctaaagttctcacggctagtggaaccccttggcattttttcacaatttcttttccaatctct 35957700  T
Q  114 acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagg 213  Q
    ||  ||| |||||| ||   | |||| |||||||| ||||||||||||||||||| ||||| |||||| | | | ||||||||||  ||||| || |       
T  35957701 acttgatttggataatttttttcttcgccttccttgaatgcccatttgacaaacagagatatacaatcctttggagaaagaccttttaaaacataaggaa 35957800  T
Q  214 gaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcca 313  Q
     || |  |||||||||||||||||||||||| || ||||| ||||| || ||||||||||||| |||||| ||||||||  | || ||||| |||| |||    
T  35957801 aaacatcacccatcattgaagcaattgagttactgcgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaattcgatcaattcaagcca 35957900  T
Q  314 ttttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaatatcaaag 413  Q
     ||||||||||||||||||||||  || ||||  ||||  |||||||| ||||||| |||||| ||| |   |||||||  ||||||| ||||||| |||    
T  35957901 ctttgcacgatcatcattccatacgtcatctaacacaactaaaaacttttgaccagaaagtttttgtttgagacgacttactagctgcacaatatctaag 35958000  T
Q  414 ttgttgatgttttct 428  Q
    |||||||||||||||    
T  35958001 ttgttgatgttttct 35958015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 14 - 435
Target Start/End: Original strand, 35938939 - 35939364
Alignment:
Q  14 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 113  Q
    |||||||||||||||| ||||||| || |  ||||||||||||||| ||||||  |||||||| |||  |||||||||||||||||| ||  |||| | |    
T  35938939 ccacttatttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaactccttgacattttttcacaatttcctttgcaatcttc 35939038  T
Q  114 acgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagg 213  Q
    || |||| |||||||||  || |||||||||||||||||||  |||||||||||| ||||||||  |  |||   ||||| || |  || |  |||||||    
T  35939039 acaagatttggatatttttcttcttcaccttccttaaatgctgatttgacaaacagagataaactgttctctttagaaaggccatgtaatagatacgagg 35939138  T
Q  214 gaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcca 313  Q
    ||| ||| ||| ||||||||||||| || || || ||||| ||||| |||||||||| | || |||  || ||||||||  ||||| |||||||||||||    
T  35939139 gaacagtgcccgtcattgaagcaatcgatttactgcgtgttgtcacaatgattttgcattctactgtgccaacttttatcaaatctttcaactcaatcca 35939238  T
Q  314 ttttgcacgat----catcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaatatc 409  Q
    ||||| |||||    ||||||||||||| || ||||  || || |||||||| ||||||| |||||||  |||   |||||||   |||||| |||||||    
T  35939239 ttttgaacgatcatccatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgacttacaagctgcacaatatc 35939338  T
Q  410 aaagttgttgatgttttcttggtgag 435  Q
     |||||||| ||||||||||| ||||    
T  35939339 taagttgttaatgttttcttgctgag 35939364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 325
Target Start/End: Original strand, 35952171 - 35952328
Alignment:
Q  168 aaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattt 267  Q
    |||||||||||||  | | | |||||||||| |||||| |||||||||| | ||||||||||  ||||||||||  | |||||||| ||||| || ||||    
T  35952171 aaagataaacaattctttggagaaagacctttcaaaacatacgagggaacattacccatcatccaagcaattgaactactacgtgttgtcaccataattt 35952270  T
Q  268 tgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatc 325  Q
    ||||| ||| |||||| |||| ||   ||| | |||| |||||||| |||||||||||    
T  35952271 tgctttctggtgcaccaacttctagcaaatatttcaattcaatccactttgcacgatc 35952328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 35952032 - 35952148
Alignment:
Q  14 ccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgc 113  Q
    ||||||| |||||||  | |||||||| | ||||||||| |||| | ||||||  ||||||||||||  ||||||||||||| | ||||| ||||| |      
T  35952032 ccacttacttaaatcgaagtttgagaagagggaacttcccaatgatttcacagccagtggaaccccttgacattttttcacagtatcttttccaatctct 35952131  T
Q  114 acgagatctggatattt 130  Q
    || |||| |||||||||    
T  35952132 actagatttggatattt 35952148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 9 - 431
Target Start/End: Original strand, 18125316 - 18125738
Alignment:
Q  9 aatatccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaa 108  Q
    ||||||||  ||||||||||| |||||||||||| |||||||||||||||||| ||||  ||||||||||||   |||||||||||||| ||||| || |    
T  18125316 aatatccatgtatttaaatcaaattttgagaatagggaacttcctaatgttctaacagctagtggaaccccttggcattttttcacaatctcttttccta 18125415  T
Q  109 tatgcacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgta 208  Q
    | |  || |||| |||||||||  || |||| |||||||| ||||||||||||||||| | |||||||||||| |  |  |||||||||| |||||| ||    
T  18125416 tctctactagatttggatatttttcttcttcgccttccttgaatgcccatttgacaaatagagataaacaatccttcaaagaaagaccttgcaaaacata 18125515  T
Q  209 cgagggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactca 308  Q
     ||||||| | |||||||||| ||||||||||||||  ||||||| ||||| || ||||||||||||  ||  || ||||||||  ||||| |||||||     
T  18125516 tgagggaacattacccatcatcgaagcaattgagttattacgtgttgtcaccataattttgcttcctcttgtgccaacttttatcaaatctttcaactcg 18125615  T
Q  309 atccattttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaatat 408  Q
    ||||| |||||||||||||||||||||| ||| ||||  ||||| |||||||| ||||  | |||| | ||| |   | |||||  ||| ||| ||||||    
T  18125616 atccactttgcacgatcatcattccatacatcatctaacacaagtaaaaacttttgacttgaaagtgtttgtttcagaagacttactagttgcacaatat 18125715  T
Q  409 caaagttgttgatgttttcttgg 431  Q
    | |||||| ||||||||||||||    
T  18125716 ctaagttgatgatgttttcttgg 18125738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 18117672 - 18118088
Alignment:
Q  18 ttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatgcacga 117  Q
    |||||||||||| ||||||| || |   | |||||||||||||||||    ||||||||||| || ||||| |||||||||||||| || || |  || |    
T  18117672 ttatttaaatcaaattttgaaaacagacagcttcctaatgttctcacgacgagtggaacccccgcgcatttcttcacaatttcttttcctatctcaacta 18117771  T
Q  118 gatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaat 217  Q
    ||| |||||||||  || |||| |||||||| ||||||||||| ||||||||||||||||| | ||| |  ||||| ||||  ||||| || |||||||     
T  18117772 gatttggatatttgtcttcttcgccttccttgaatgcccatttcacaaacaaagataaacagttttcaatagaaaggccttttaaaacataggagggaac 18117871  T
Q  218 agtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccatttt 317  Q
    |||||||||||| || |||||||||||||| ||||| ||| | |||| |||||||||| |||  || ||||| ||  ||||| ||||||| |||||||||    
T  18117872 agtacccatcatcgatgcaattgagttgctgcgtgttgtcgccatgactttgcttcctactgtgccaactttaatcaaatctttcaactcgatccatttt 18117971  T
Q  318 gcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaatatcaaagttgt 417  Q
     ||| |||||||||||||||||| ||||  ||||| |||||| | | ||||  ||||||| ||||   ||||||||||||||||||||||||||| | ||    
T  18117972 acacaatcatcattccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtagctgctcaatatcaaaatggt 18118071  T
Q  418 tgatgttttcttggtga 434  Q
    | |||||||||||||||    
T  18118072 ttatgttttcttggtga 18118088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 13 - 441
Target Start/End: Complemental strand, 26329104 - 26328676
Alignment:
Q  13 tccacttatttaaatcatattttgagaataaggaacttcctaatgttctcacagaaagtggaacccctgcacattttttcacaatttctttgccaatatg 112  Q
    ||||||||| ||||||| |||||||||| |  ||||||||||| ||| |||| |  | ||||| ||||   ||||||||| | || ||||| ||||| |     
T  26329104 tccacttatctaaatcaaattttgagaagagtgaacttcctaacgttttcactgctaatggaatccctcggcattttttcgctatatcttttccaatctc 26329005  T
Q  113 cacgagatctggatatttaactacttcaccttccttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgag 212  Q
    |   |||| |||||| || ||| |||| |||||||||||||||||||||||||| | ||| |||||||  || |  ||||||||||  |||   |||  |    
T  26329004 cgatagatgtggatactttacttcttctccttccttaaatgcccatttgacaaagagagacaaacaattatccaaagaaagaccttttaaagtatacatg 26328905  T
Q  213 ggaatagtacccatcattgaagcaattgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatcc 312  Q
    ||||  || |||||||| ||||||||  |||| |||||||| ||||||| |||||||||| || ||||||| ||||||||   |||| ||||||||||||    
T  26328904 ggaaccgttcccatcatcgaagcaatcaagttactacgtgttgtcactaagattttgctttctactgcaccaacttttatcagatctttcaactcaatcc 26328805  T
Q  313 attttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaatatcaaa 412  Q
    |||||| ||| | ||||| ||||||||| |||| ||| || | |||||| | ||| | ||| ||||||||   ||||||   ||  ||||||||||||||    
T  26328804 attttgaacggttatcatcccatatatcatctaagacgagtacaaactttttacctgaaagcttatgtctaagacgactcactaattgctcaatatcaaa 26328705  T
Q  413 gttgttgatgttttcttggtgagcaagag 441  Q
    ||  |  |||||||||||||||| |||||    
T  26328704 gtgttcaatgttttcttggtgagaaagag 26328676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 147 - 372
Target Start/End: Complemental strand, 49352394 - 49352169
Alignment:
Q  147 ttaaatgcccatttgacaaacaaagataaacaatcttctagggaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaattgagttgc 246  Q
    ||||| |||||||||||||||| ||||||  |||| ||||| |||||||||||||||| ||| || |   | || |||||||||   |||||||||| ||    
T  49352394 ttaaaagcccatttgacaaacacagataaggaatcctctagagaaagaccttccaaaatgtatgatgtgttggtgcccatcattttggcaattgagtggc 49352295  T
Q  247 tacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatttaatctatcaactcaatccattttgcacgatcatcattccatatatcgtctag 346  Q
    ||||||| ||||| | || ||| ||| || | || || |||| |||| |||   ||||||||| ||||||  ||||||| |||||||||| |||||| |     
T  49352294 tacgtgtagtcaccaagactttactttcttcagcgcctacttgtattaaatacttcaactcaacccatttgacacgatcctcattccatacatcgtccaa 49352195  T
Q  347 gacaagcaaaaacttctgaccagcaa 372  Q
    ||| || || ||||| | ||||||||    
T  49352194 gacgagtaagaactttttaccagcaa 49352169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 7128578 - 7128615
Alignment:
Q  72 ggaacccctgcacattttttcacaatttctttgccaat 109  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  7128578 ggaacccctgaacattttttcacaatttccttgccaat 7128615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 7721852 - 7721889
Alignment:
Q  72 ggaacccctgcacattttttcacaatttctttgccaat 109  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  7721852 ggaacccctgaacattttttcacaatttccttgccaat 7721889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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