View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13720_low_5 (Length: 376)
Name: NF13720_low_5
Description: NF13720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13720_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 6153502 - 6153845
Alignment:
| Q |
17 |
aatgaaggcggggctgagagaggaggaaatctcagagtctatccagaaagaaacttaccagcctaatattgaggaaacaagcacaatgaatcaaacttgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
6153502 |
aatgaaggcggggctgagagaggaggaaatctcagagtctatccagaaagaaacttaccagcctaacattaaggaaacaagcacaatgaatcaaacttgc |
6153601 |
T |
|
| Q |
117 |
accatatgtcaggtgaagtcaactacatgtttcattcatttatcgagtttaatcaacatattaaaatcctaatacatgcgcatattcaaatctcataacc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6153602 |
accatatgtcaggtgaagtcaactacatgtttcattcatttattgagtttaatcaacatattaaaatcctaatacatgcgcatattcaaatctcataacc |
6153701 |
T |
|
| Q |
217 |
cctattattttatgtttattaggaagattatattgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6153702 |
cctattattttatgtttattaggaagattatattgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagc |
6153801 |
T |
|
| Q |
317 |
caatggttggaggtgaagaatgtttgtccagtctgtaaggagat |
360 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6153802 |
caatggttggaggtcaagaatgtttgtccagtctgtaaggagat |
6153845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 177 - 355
Target Start/End: Complemental strand, 33800655 - 33800483
Alignment:
| Q |
177 |
ttaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgtttattaggaagattatattgatggggagcgtattggaagacttga |
276 |
Q |
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||||||||||||||| || |||||||||| | ||||||||||| || |||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |
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| T |
33800655 |
ttaaaatcctaatacttgagcatattcaagtgtcataacccctcttgttttatgtttattaggaagattttattgatggggagtgtattgggagacttga |
33800556 |
T |
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| Q |
277 |
ttgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaag |
355 |
Q |
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||| | |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |||||||| |
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| T |
33800555 |
ttg------caatcacatatatcatcttaactgcatcaaacaatggttggaggagaagaatgtttgtccaatctgtaag |
33800483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 177 - 364
Target Start/End: Complemental strand, 33729538 - 33729357
Alignment:
| Q |
177 |
ttaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgtttattaggaagattatattgatggggagcgtattggaagacttga |
276 |
Q |
| |
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||||||||||||||| || |||||||||| | ||||||||||| || |||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| |
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| T |
33729538 |
ttaaaatcctaatacttgagcatattcaagtgtcataacccctcttgttttatgtttattaggaagattttattgatggggagtgtattgggagatttga |
33729439 |
T |
|
| Q |
277 |
ttgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaaggagattgat |
364 |
Q |
| |
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||| | |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |||||||| ||| |||| |
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| T |
33729438 |
ttg------caatcacatatatcatcttaactgcatcaaacaatggttggaggagaagaatgtttgtccaatctgtaagaagactgat |
33729357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 174 - 355
Target Start/End: Original strand, 6128226 - 6128402
Alignment:
| Q |
174 |
atattaaaatcctaatacatgcgcatattcaaatctcataaccc-ctattattttatgtttattaggaagattatattgatggggagcgtattggaagac |
272 |
Q |
| |
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||||||||||||||||||||| |||||||||| | ||||||||| | ||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6128226 |
atattaaaatcctaatacatgagcatattcaagtatcataaccctcaatttttttttgtttattaggaagattatattgatggggagcatattggaagac |
6128325 |
T |
|
| Q |
273 |
ttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaag |
355 |
Q |
| |
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|| | || ||| |||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||| |||||||| |
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| T |
6128326 |
ttcactg----cac--tcacatatatcatcttgattgcatcaaacaatggtttgaggtgaagaatgcttgtccattctgtaag |
6128402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 174 - 355
Target Start/End: Original strand, 6147422 - 6147597
Alignment:
| Q |
174 |
atattaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgtttattaggaagattatattgatggggagcgtattggaagact |
273 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | ||||||||| | | |||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6147422 |
atattaaaatcctaatacatgagcatattcaagtatcataaccctcaattttttttgtttattaggaagattatattgatggggagcatattggaagact |
6147521 |
T |
|
| Q |
274 |
tgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaag |
355 |
Q |
| |
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| |||||| ||||| ||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
6147522 |
taattgta------ctcacacatatcattttgattgcatcgaacaatggttgggggtgaagaatgtttgtccagtctgtaag |
6147597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 6147038 - 6147129
Alignment:
| Q |
67 |
aaacttaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcattta |
158 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6147038 |
aaacataccggcctaatattgaggaaacaagcacaatgaatcaaatatgcaccatatgtcaggtgaggtcaactacatgtttcattcattta |
6147129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 33801140 - 33801062
Alignment:
| Q |
56 |
tatccagaaagaaacttaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
134 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33801140 |
tatccagcaagaaacttaccagcctaatactgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
33801062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 33730023 - 33729946
Alignment:
| Q |
57 |
atccagaaagaaacttaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
134 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33730023 |
atccagcaagaaacttaccagcctaatactgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
33729946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 6127867 - 6127943
Alignment:
| Q |
81 |
aatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcattt |
157 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
6127867 |
aatactgaggaaacaagcacaatgaatcaaacatgcaccatatgtcaggtgaggtcaactacatgtttcattcattt |
6127943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 359
Target Start/End: Original strand, 6121040 - 6121106
Alignment:
| Q |
293 |
atatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaaggaga |
359 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||||||||| |
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|
| T |
6121040 |
atatttcatcttgactgcatcaaacaatggttggagctgaggaatgtttgtccaatctgtaaggaga |
6121106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 6140369 - 6140440
Alignment:
| Q |
85 |
ttgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcatt |
156 |
Q |
| |
|
||||||||||||| || ||||||||| || |||||||| ||||||| | ||||||||||||||||||||| |
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|
| T |
6140369 |
ttgaggaaacaagtactcagaatcaaacatgtaccatatgccaggtgaggccaactacatgtttcattcatt |
6140440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 9886570 - 9886623
Alignment:
| Q |
298 |
tcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctg |
351 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||| |||||| |||| |
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|
| T |
9886570 |
tcatcttgactgcatcaaacaatggttggagttgaagaatgtctgtccaatctg |
9886623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 9884863 - 9884815
Alignment:
| Q |
298 |
tcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtcca |
346 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| | |||||| |
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| T |
9884863 |
tcatcttgactgcatcaaacaatggttggagttgaagaatttatgtcca |
9884815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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