View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13720_low_6 (Length: 359)
Name: NF13720_low_6
Description: NF13720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13720_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 3512389 - 3512717
Alignment:
| Q |
20 |
aattaaattccaataatattatgccactatctgatttcgtaattgtaattaagaatatgattaaaattagtcaccagaaagacgattttgctattcaagt |
119 |
Q |
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| T |
3512389 |
aattaaattccaataatattacgccactatctgatttcgtaattgtaattaagaatatgattaaaattagtcaccagaaagacgattttgctattcaagt |
3512488 |
T |
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| Q |
120 |
atacatttatgcaatgaggttgtagctaatactttatatgattttcacctttgtagtttaagaaagatacggataatgctgatctcaattgtaacaatcc |
219 |
Q |
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| T |
3512489 |
atacatttatgcaatgaggttgtagctaatactttatatgattttcacctttgtagtttaagaaagatacggataatgctgatctcaattgtaacaatcc |
3512588 |
T |
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| Q |
220 |
taacagtgcttcaaggggagactggtggctaggtaggaaccataatttattttgattaaaacgatttcatagtttaaaaactagatgttaataaataaaa |
319 |
Q |
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| T |
3512589 |
taacagtgcttcaaggggagactggtggctaggtaggaaccataatttattttgattaaaacgatttcatagtttaaaaactagatgttaataaataaaa |
3512688 |
T |
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| Q |
320 |
atgtccttactcactttcattatgcctat |
348 |
Q |
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| T |
3512689 |
atgtccttactcactttcattatgcctat |
3512717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 3204089 - 3203975
Alignment:
| Q |
116 |
aagtatacatttatgcaatgaggttgtagctaatactttatatgattttcacctttgtagtttaagaaagatacggataatgctgatctcaattgtaaca |
215 |
Q |
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| T |
3204089 |
aagtatac-tttatgcaatgaggttgtagctaatactttata--attttcacctttgtagttcaagaaagatacggataacgctga-cccaattgtaaca |
3203994 |
T |
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| Q |
216 |
atcctaacagtgcttcaag |
234 |
Q |
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| T |
3203993 |
atccaaacagtgcttcaag |
3203975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 124 - 273
Target Start/End: Complemental strand, 3651290 - 3651141
Alignment:
| Q |
124 |
atttatgcaatgaggttgtagctaatactttatatgattttcacctttgtagtttaagaaagatacggataatgctgatctcaattgtaacaatcctaac |
223 |
Q |
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||||||||||| | |||| |||||||||||||||| ||||||||| |||| ||| |||||| ||||| |||||| |||||||||| |||||||| | ||| |
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| T |
3651290 |
atttatgcaataatgttgaagctaatactttatataattttcaccgttgtggttcaagaaatatacgaataatggtgatctcaatggtaacaattcaaac |
3651191 |
T |
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| Q |
224 |
agtgcttcaaggggagactggtggctaggtaggaaccataatttattttg |
273 |
Q |
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| T |
3651190 |
agcgcttcaagaggcgactggtggcaaggtaagaacgataatttattttg |
3651141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 315
Target Start/End: Original strand, 3500428 - 3500525
Alignment:
| Q |
221 |
aacagtgcttcaaggggagactggtgg---ctaggtaggaaccataatttattttgattaaaacgatttcatagtttaaaaactagatgttaataaat |
315 |
Q |
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| T |
3500428 |
aacagtgcttcaagaggggactggtggtagctaggtaggaaccataatttatttttgttaaaacggtttcatagtttaaaaattagatgttaataaat |
3500525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 3204158 - 3204090
Alignment:
| Q |
20 |
aattaaattccaataatattatgccactatctgatttcgtaattgtaattaagaatatgattaaaatta |
88 |
Q |
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||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||||||| ||||||| |
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| T |
3204158 |
aattaaattccaataatattatgccactagctggtttcataattgtaagtaagaatatgataaaaatta |
3204090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 3500293 - 3500383
Alignment:
| Q |
110 |
ctattcaagtatacatttatgcaat----gaggttgtagctaatactttatatgattttcacctttgtagtttaagaaagatacggataat |
196 |
Q |
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| T |
3500293 |
ctattcaagtatacatttatgcaatcaatgaggttgtagctaatactttgtataactttcacctttgtggttcaagtaagatacgaataat |
3500383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 257
Target Start/End: Original strand, 34851691 - 34851785
Alignment:
| Q |
163 |
ttcacctttgtagtttaagaaagatacggataatgctgatctcaattgtaacaatcctaacagtgcttcaaggggagactggtggctaggtagga |
257 |
Q |
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| T |
34851691 |
ttcacttttgcagttcaagaaagataagaatcatggtgatcacaatggtaacaattccagcagtgcttcaagaggggactggtgggaaggtagga |
34851785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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