View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13720_low_7 (Length: 338)
Name: NF13720_low_7
Description: NF13720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13720_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 38307751 - 38308072
Alignment:
| Q |
1 |
tgctaaatcaaaaatagactgggaaacnnnnnnncagatgtctcccacattatttaaagcaattgacatccaagtattaatcaaagtaacattaataacc |
100 |
Q |
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| T |
38307751 |
tgctaaatcaaaaatagactgggaaacaaaaaa-cagatgtctcccacattatttaaagcaattgacatccaagtattaatcaaagtaacattaataacc |
38307849 |
T |
|
| Q |
101 |
attttacaccgttcttgaggaaattcgaactcttcaggttataatgttaaactattaccactaaactagtacatgaagtgtaattgacatgcaagtatga |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38307850 |
attttacaccgttcttgaggaaatttgaactcttcaggttataatgttaaactattaccactaaactagtacatgaagtgtaattgacatgcaagtatga |
38307949 |
T |
|
| Q |
201 |
gagaggatagaacttagaagtagaagaggccacttttacttgagccaaaatacgatgtgatgagggaaggggtgatcactaaaacctgagttttttggga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38307950 |
gagaggatagaacttagaagtagaagaggccacttttacttgagccaaaatacgatgtgatgagggaaggggtgatcactaaaacctgagttttttggga |
38308049 |
T |
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| Q |
301 |
aattaataatatcccatgtgact |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
38308050 |
aattaataatatcccatgtgact |
38308072 |
T |
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