View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13720_low_9 (Length: 293)
Name: NF13720_low_9
Description: NF13720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13720_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 36718014 - 36717850
Alignment:
| Q |
109 |
tcttaaaaagtgagatatttggaagttgaaccaattccgcacatgcttccaggtttgatgatgcctgatgaattactgctactcctcttctggatacaat |
208 |
Q |
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| T |
36718014 |
tcttaaaaagtgagatatttggaagttgaaccaattccacccatgcttccagttttgatgatgcctgatgaattact---actcttcttctggttacaat |
36717918 |
T |
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| Q |
209 |
tattcttcattgctgtgatattttttacctcaaaactattaagaaaatctttctttgacttcttcatt |
276 |
Q |
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| T |
36717917 |
tattcttcattgctgtgatattttttacctcaaaactattaagaaaatctttctttgacttcttcatt |
36717850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 1352972 - 1352880
Alignment:
| Q |
54 |
agcaagtaatgatacacagcattgttatcctcattgcctgcccctaaaatacccttcttaaaaagtgagatatttggaagttgaaccaattcc |
146 |
Q |
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| T |
1352972 |
agcaaataatgatacatagcattgttatcctcattgcctgcccctaaaatttccttcttaaaaagtgagatatttggaagttgaaccaattcc |
1352880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 2040669 - 2040764
Alignment:
| Q |
51 |
aaaagcaagtaatgatacacagcattgttatcctcattgcctgcccctaaaatacccttcttaaaaagtgagatatttggaagttgaaccaattcc |
146 |
Q |
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| T |
2040669 |
aaaagcaaataatgatacatagcattgttatcttcattgcctgaccctaaaatttcgttcttaaaaagtgagatatttggaagttgaaccaattcc |
2040764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 1358034 - 1357910
Alignment:
| Q |
51 |
aaaagcaagtaatgatacacagcattgttatcctcattgcctgcccctaaaatacccttcttaaaaagtgagatatttggaagttgaaccaattccgcac |
150 |
Q |
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|||| ||| |||||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||||| |||||| ||| |
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| T |
1358034 |
aaaatcaaataatgatacatagcattgttatcctcattgcctgcccctaaaa-aatatccttaaaaagtgagatacttggaagttgaaacaattcaacac |
1357936 |
T |
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| Q |
151 |
atgcttccaggtttgatgatgcctgat |
177 |
Q |
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| T |
1357935 |
atgctt-caagttttatgatgcctgat |
1357910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 10043768 - 10043832
Alignment:
| Q |
206 |
aattattcttcattgctgtgatattttttacctc-aaaactattaagaaaatctttctttgactt |
269 |
Q |
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| T |
10043768 |
aattattcttcattgctgtgatattttttacctcaaaaactattaagaaaatctttctttgactt |
10043832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 1352872 - 1352810
Alignment:
| Q |
214 |
ttcattgctgtgatattttttacctcaaaactattaagaaaatctttctttgacttcttcatt |
276 |
Q |
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| T |
1352872 |
ttcattgctgtgatatttttgacctcaaaactattaagaaaatccttctttgacttcttcatt |
1352810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 2040772 - 2040834
Alignment:
| Q |
214 |
ttcattgctgtgatattttttacctcaaaactattaagaaaatctttctttgacttcttcatt |
276 |
Q |
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| T |
2040772 |
ttcattgctgtgttatttttgacctccaagctattaagaaaatccttctttgacttcttcatt |
2040834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 18178755 - 18178862
Alignment:
| Q |
51 |
aaaagcaagtaatgatacacagcattgttatcctcattgcctgcccctaaaatacccttcttaaaaagtgagatatttggaagttgaaccaattccgcac |
150 |
Q |
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|||||||| |||||||||| ||||||| ||||||||||| |||||||||||| | |||| || || | || || ||||||| ||||||||| ||| || |
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| T |
18178755 |
aaaagcaaataatgatacatagcattgctatcctcattgtctgcccctaaaacatcctttttgaagattgggacctttggaacttgaaccaactccagac |
18178854 |
T |
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| Q |
151 |
atgcttcc |
158 |
Q |
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| T |
18178855 |
atgcttcc |
18178862 |
T |
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