View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13721_high_14 (Length: 240)
Name: NF13721_high_14
Description: NF13721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13721_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 39182362 - 39182578
Alignment:
| Q |
7 |
aaaagaaaagaaaatataggatgcattaaaacttgtgtatccattgcaaccaaacacaagtgaaagatgtttgtttaaagcagctttggctgtaagtcat |
106 |
Q |
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| T |
39182362 |
aaaaaaaaaaaaaatataggatgcattaaaacttgtgtatccattgcaaccaaacacaagtgaaagatgtttgtttaaagcagctttggctgtaagtc-t |
39182460 |
T |
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| Q |
107 |
tgctatttcatctactagaaaatcaaagaattgaaacctataagaactcaaaagtcttgtggagtctaacctccaagatttttgccgcgatttgcttgag |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39182461 |
tgctatttcatctactagaaaatcaaagaattgaaacctataagaactcaaaagtcttgtgaagtctaacctccaagatttttgccgcgatttgcttgag |
39182560 |
T |
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| Q |
207 |
catcagctgcagagttag |
224 |
Q |
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|||||||||||||||||| |
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| T |
39182561 |
catcagctgcagagttag |
39182578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 2103243 - 2103061
Alignment:
| Q |
44 |
tatccattgcaaccaaacacaagtgaaagatgtttgtttaaagcagctttggctgtaagtcattgctatttcatctactagaaaatcaaagaattgaaac |
143 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2103243 |
tatccattgcaaccaaacacaagtgaaagatgtttttttaaagcaactttggctgtaagtcattgctatttcatctactaggaaatcaaagaattgaaac |
2103144 |
T |
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| Q |
144 |
ctataagaactc--aaaagtcttgtggagtctaacctccaagatttttgccgcgatttgcttgagcatcagctgcagagttag |
224 |
Q |
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| T |
2103143 |
caataagaactcagaaaagtcttgtgaagtctaacctccaagatttttgccacgatttgcttgagcatcagctgcagagttag |
2103061 |
T |
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