View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13721_high_16 (Length: 235)
Name: NF13721_high_16
Description: NF13721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13721_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 32955510 - 32955717
Alignment:
| Q |
11 |
attattctcatcaatattttctttctcttgtttttaactttattatgtcttactagttactagannnnnnnnngc-tttctacaatctcataacccttgt |
109 |
Q |
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| T |
32955510 |
attattctcatcaatattttctttctcttgcttttaactttattatgtcttactagttactagattttttttttcctttctacaatctcataacccttgt |
32955609 |
T |
|
| Q |
110 |
cgattttctgcgtgtaagcataccctttaagaaataggaaaaggccaatatataaagtggtgataaaggtatatagtttcaggtgcacaaataataaaac |
209 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32955610 |
ccattttctgcgtgtaagcataccctttaagaaataggaaaaggccaatatataaagtggtgataaaggtatatagtttcaggtgcacaaataataaaac |
32955709 |
T |
|
| Q |
210 |
acatggat |
217 |
Q |
| |
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|||||||| |
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| T |
32955710 |
acatggat |
32955717 |
T |
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