View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13721_high_5 (Length: 493)
Name: NF13721_high_5
Description: NF13721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13721_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 40111661 - 40112129
Alignment:
| Q |
1 |
atactttcgagtggaaccaaggatccacccacactaataaacaatgtatacgttctattaaatatccaaaataaccccatggaaaaatccaaaatttttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40111661 |
atactttcgagtggaaccaaggatccacccacactaataaacaatgtatacgttctattaaatatccaaaataaccccatggaaaaatccaaaatttttc |
40111760 |
T |
|
| Q |
101 |
atatggtattgagagatacaaataatacagacttctttcttctacaaaagccacgattagaaaagcatattaagattaatcaacaatgaattggtccaag |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40111761 |
atatggtatttagagatacaaataatacagacttctttcttctacaaaagccacgattagaaaagcatattaagattaatcaacaatgaattgttccaag |
40111860 |
T |
|
| Q |
201 |
tggtaaggaactcaaatcccttaagcatgtcgttaattggatcatgcttatggagaaaaaatctgttgggcggggagaatccaccttatgtgccctatat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40111861 |
tggtaaggaactcaaatcccttaagcatgtcgttaattggatcatgcgtatggagaaaaaatctgttgggcggggagaatccaccttatgtgccctatat |
40111960 |
T |
|
| Q |
301 |
gttttcgaacgagattagttattgttaaacggtggtggaaacttctaaccaatataatggtnnnnnnntaaccatgattaaaaacaaatgaatataaata |
400 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40111961 |
gttttcgacggagattagttattgttaaacggcggtggaaacttctaaccaatataatggtaaaaaaataaccatgattaaaaacaaatgaatataaata |
40112060 |
T |
|
| Q |
401 |
gcaacatagcttgcaccggatgttgcatgcagttcttaccaactgggcttcaaatttgcagcaacgtag |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40112061 |
gcaacatagcttgcaccggatgttgcatgcagttcttaccaactgggcttcaaatttgcagcaacgtag |
40112129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 43460320 - 43460271
Alignment:
| Q |
181 |
caacaatgaattggtccaagtggtaaggaactcaaatcccttaagcatgt |
230 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| || ||||||||||||| |
|
|
| T |
43460320 |
caacaatggattggtccaagtggtaagggacttgaaccccttaagcatgt |
43460271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 32729359 - 32729307
Alignment:
| Q |
309 |
acgagattagttattgttaaacggtggtggaaacttctaaccaatataatggt |
361 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||| |||||||| ||||| |
|
|
| T |
32729359 |
acgagattagtcattgttaagcggttgtggaaacttcataccaatatcatggt |
32729307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University