View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13721_low_1 (Length: 573)
Name: NF13721_low_1
Description: NF13721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13721_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 19 - 570
Target Start/End: Complemental strand, 25260734 - 25260183
Alignment:
| Q |
19 |
aatccagcaatgatgaaataaaagtattccaatcttcccttattaatatcactatcaagccaatctgcttcaccttgtttcccagtataagaatgcacaa |
118 |
Q |
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| T |
25260734 |
aatccagcaatgatgaaataaaagtattccaatcttcccttattaatatcactatcaagccaatctgcttcaccttgtttccctgtataagaatgcacaa |
25260635 |
T |
|
| Q |
119 |
tgttcacaataaatgtgctaaggttactaccaactgaaagattgagacatagcaaagaattgcttatacttctcatgctttcaggtgattctttgttgaa |
218 |
Q |
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| T |
25260634 |
tgttcacaataaatgtgctaaggttactaccaactgaaagattaagacatagcaaagaattgcttatacttctcatgctttcaggtgattctttgttgaa |
25260535 |
T |
|
| Q |
219 |
aaactcagtgtgtccaactgttccaaaaatatgacaaaatgctataagcaagaattgaggagctagccacattaccgacataggtgcaacgccgttagaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
25260534 |
aaactcagtgtgtccaactgttccaaaaatatgacaaaatgctataagcaagaattgaggagctagccacattaccgacataggcgcaacaccgttagaa |
25260435 |
T |
|
| Q |
319 |
tctcccattgaaatcgctaaatctcgtctcgttttctcaaccaatcctgcaactactactgctagaattgcagcaccatgtccaagtccaattctttgaa |
418 |
Q |
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| T |
25260434 |
tctcccattgaaatcgctaaatctcgtctcgttttctcaaccaatcctgcaactactactgctagaattgcagcaccatgtccaagtccaattctttgaa |
25260335 |
T |
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| Q |
419 |
gagatgtaagtccttgttcttgttttgtgattttctctagtaaaggtgaaattacttgatcatagaatggtaggaatatacctattgctattaatgatat |
518 |
Q |
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| T |
25260334 |
gagatgtgagtccttgttcttgttttgtgattttctctagtaaaggtgaaattacttgatcatagaatggtaggaatatacctattgctattaatgatat |
25260235 |
T |
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| Q |
519 |
tactgttactgagccagcatgtatctcaaaattaaaattgaagagtcctatg |
570 |
Q |
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| T |
25260234 |
tactgttactgagccagcatgtatctcaaaattaaaattgaagagtcctatg |
25260183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 16695205 - 16695410
Alignment:
| Q |
31 |
atgaaataaaagtattccaatcttcccttattaatatcactatcaagccaatctgcttcaccttgtttcccagtataagaatgcacaatgttcacaataa |
130 |
Q |
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| T |
16695205 |
atgaaatagaaatactccaattttcccttattgacatcactatccaaccaatcaggttcaccttgttttccactaaaactatgaataatgttcacaatga |
16695304 |
T |
|
| Q |
131 |
atgtgctaaggttactaccaactgaaagattga-gacatagcaaagaattgcttatacttctcatgctttcaggtgattctttgttgaaaaactcagtgt |
229 |
Q |
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| T |
16695305 |
aagtgcttaaattacttgcaactgct-gtttgaagtgaaagcaaagaattaccaatacttctcattttatcaggagattccttgttgaaaaactcagtat |
16695403 |
T |
|
| Q |
230 |
gtccaac |
236 |
Q |
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||||||| |
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| T |
16695404 |
gtccaac |
16695410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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