View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13721_low_12 (Length: 325)
Name: NF13721_low_12
Description: NF13721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13721_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 43815059 - 43815351
Alignment:
| Q |
18 |
ctaatgacatatccaatgaacacaaacctcgaagaacaactttccaattccaaccgtttcaacctcttcaaactctggaactatccttccttccaatcct |
117 |
Q |
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| T |
43815059 |
ctaatgacatacccaatgaacacaaacctcgaagaacaactctcca------accgtttcaacctcttcaaactctggaactatccttccttccaatcct |
43815152 |
T |
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| Q |
118 |
tgtctgaaacccacgcaaattccattcgcgcattggtttgcagcaccaaaatcggagccgacgcaaacacaatcgattctcttcctaatcttgagattgt |
217 |
Q |
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| T |
43815153 |
tctcagaaacccacgcaaattcaattcgtgcattggtttgcaacaccaaaatcggagcggatgcaaatacaatcgattctcttcctaatcttgagattgt |
43815252 |
T |
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| Q |
218 |
gtctacttacagcgttggatttgataaaattgatctgaagaattgcagagagaaaggaatttgggttacgaatacgccgaatgtattgactgatgatgt |
316 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||| |||| |||||||||||||| |
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| T |
43815253 |
ttctacttacagtgttggatttgataaaattgatctgaagaaatgcagggagaaagggatttgtgttacgaatacgccggatgtgttgactgatgatgt |
43815351 |
T |
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