View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13721_low_13 (Length: 284)
Name: NF13721_low_13
Description: NF13721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13721_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 122 - 266
Target Start/End: Complemental strand, 3848801 - 3848658
Alignment:
| Q |
122 |
tcttggtttttatttgtcttttgtataactcttaatcgttttctaattgtccgttgaattgatactatttctggttgatgtaactttgttttactctttt |
221 |
Q |
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| T |
3848801 |
tcttggtttttatttgtcttttgtataactcttaatggttttttaattgtccgttgaat-gatactatttctggttgatgtaattttgttttactctttt |
3848703 |
T |
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| Q |
222 |
ctgcttcaaggtatcaatgaagatgatgaaaaagacggtgtagat |
266 |
Q |
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| T |
3848702 |
ttgctttaaggtatcaatgaagatgatgaaaaagacggcgtagat |
3848658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 3849070 - 3848948
Alignment:
| Q |
8 |
attattctagtgttgttataatgactattttatgactttgatgttgtaggaaattactctcgttaaagagattttattgtttacaataatactttggatg |
107 |
Q |
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| T |
3849070 |
attattctagtgttgttataatgactattttatgactttgatgttgtaggaaattactcttgttaaagagattttcttgtttacaataatactttaggtg |
3848971 |
T |
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| Q |
108 |
tgttttaataattgtcttggtttt |
131 |
Q |
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| T |
3848970 |
tgttttaataatt-tcttggtttt |
3848948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 259
Target Start/End: Complemental strand, 35524247 - 35524113
Alignment:
| Q |
118 |
attgtcttggtttttatttgtcttttgtataactcttaatcgttttctaattgtccgttgaattgatactatttctggttgatgtaactttgttttactc |
217 |
Q |
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| T |
35524247 |
attgtcttggtttttatttgtgttatgtataactcctaatgactttctaattgtccattgaattgata-------tggttgatgtaattttgttttactc |
35524155 |
T |
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| Q |
218 |
ttttctgcttcaaggtatcaatgaagatgatgaaaaagacgg |
259 |
Q |
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| T |
35524154 |
ttttttgcttcaaggtatcaatgaagatgatgaaaaagacgg |
35524113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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