View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13721_low_2 (Length: 540)

Name: NF13721_low_2
Description: NF13721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13721_low_2
NF13721_low_2
[»] chr8 (13 HSPs)
chr8 (14-273)||(29160174-29160433)
chr8 (333-525)||(12351121-12351322)
chr8 (274-525)||(39254787-39255051)
chr8 (274-525)||(44752359-44752618)
chr8 (274-419)||(62144-62288)
chr8 (333-419)||(1366517-1366603)
chr8 (333-415)||(216451-216533)
chr8 (333-415)||(693011-693093)
chr8 (333-415)||(697220-697302)
chr8 (333-415)||(730074-730156)
chr8 (333-415)||(853969-854051)
chr8 (413-457)||(62047-62091)
chr8 (413-456)||(1366421-1366464)
[»] chr5 (3 HSPs)
chr5 (273-419)||(13654932-13655077)
chr5 (409-457)||(13655129-13655177)
chr5 (333-375)||(4553787-4553829)
[»] chr6 (1 HSPs)
chr6 (274-415)||(9574479-9574619)
[»] chr4 (10 HSPs)
chr4 (333-419)||(28684136-28684222)
chr4 (333-419)||(47199299-47199385)
chr4 (333-414)||(55159238-55159319)
chr4 (333-415)||(43738381-43738463)
chr4 (337-415)||(47524104-47524181)
chr4 (409-457)||(28684036-28684084)
chr4 (409-463)||(47199193-47199247)
chr4 (189-240)||(39624195-39624246)
chr4 (272-314)||(47198603-47198645)
chr4 (274-314)||(25371553-25371593)
[»] chr1 (6 HSPs)
chr1 (333-415)||(37874869-37874951)
chr1 (273-387)||(35616710-35616824)
chr1 (333-387)||(48870689-48870743)
chr1 (333-385)||(17494470-17494522)
chr1 (265-314)||(48869760-48869809)
chr1 (274-314)||(37874064-37874104)
[»] scaffold1037 (1 HSPs)
scaffold1037 (334-415)||(2807-2888)
[»] scaffold1031 (1 HSPs)
scaffold1031 (334-415)||(2926-3007)
[»] chr2 (4 HSPs)
chr2 (338-415)||(5277303-5277380)
chr2 (337-415)||(36475841-36475917)
chr2 (268-314)||(5276459-5276505)
chr2 (189-251)||(28104999-28105061)
[»] chr3 (2 HSPs)
chr3 (333-387)||(17227884-17227938)
chr3 (202-251)||(24094287-24094336)


Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 29160174 - 29160433
Alignment:
Q  14 atctaagtttagtttgtaacctacaaagattaccccaaaacttgataagtcaaattatggatggtgttgaccgacaaaatatctgaacaaaattcttcat 113  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||     
T  29160174 atctaagtttagtttgtaacctacaaagattaccccaaaacctgataagtcaaatcatggatggtgttgactgacaaaatatctgaacaaaatccttcaa 29160273  T
Q  114 acatacatgtaatggtcaaatcatctgtcatgtgactcttaatgagctaagtagacatgtcagatggaaataacggattctatgaacaaactgataaaat 213  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29160274 acatacatgtaatggtcaaaccatctgtcatgtgactcttaatgagctaagtagacatgtcagatggaaataacggattctatgaacaaactgataaaat 29160373  T
Q  214 tcaagtctcaaatgtagggattctaataattttgaataaaagaatccaatacaaaagaga 273  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29160374 tcaagtctcaaatgtagggattctaataattttgaatagaagaatccaatacaaaagaga 29160433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 333 - 525
Target Start/End: Original strand, 12351121 - 12351322
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaacaacaac---acactctt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||   ||||||||    
T  12351121 accattagattgagtagtaccaccattgttattatagtctatccacactatattttcttcacatcatttctaaacttaacaacaacaacaaaacactctt 12351220  T
Q  430 ctctccttcgaaaatcaaaacaaaacaatatgaatatccagaaaatcttcataatcata------atcttcttctctccttttatttttagggaatcatc 523  Q
    |||||||| ||||||||||||||||||| ||| | ||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||    
T  12351221 ctctccttagaaaatcaaaacaaaacaacatggaaatccagaaaatcttcataatcataatcttcatcttcttctctccttttatttttagggaatcatc 12351320  T
Q  524 tt 525  Q
    ||    
T  12351321 tt 12351322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 274 - 525
Target Start/End: Original strand, 39254787 - 39255051
Alignment:
Q  274 ggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtcta 373  Q
    |||| ||||||| ||| ||||| |||||||||||||||||||| || |||         | |||||||||||||||||||| ||||||||||||||||||    
T  39254787 ggtggcatttaatttgggaaaggagacttctttcccaccataggaaagtctttttttt-atcattagattgagtagtaccatcattgttattatagtcta 39254885  T
Q  374 tccacat--tatatttgcttcacatcatctctaaccttaacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaatatgaatatccaga 471  Q
    ||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||| |||    
T  39254886 tccacacactatattttcttcacatcatctctaaccttaacaacaacaacacactcttctctcctttgaaaatcaaaacaaaacaacatggaaatctaga 39254985  T
Q  472 aaatcttcataatcata------------atcttcttctctccttttatttttagggaatcatctt 525  Q
    |||||||||||||||||            |||||||||||||||||||||||||||||||||||||    
T  39254986 aaatcttcataatcataatcttcatcttcatcttcttctctccttttatttttagggaatcatctt 39255051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 274 - 525
Target Start/End: Complemental strand, 44752618 - 44752359
Alignment:
Q  274 ggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtcta 373  Q
    |||| ||||||||||| ||||| |||||||||||||||||||| ||  ||         ||||||| |||||||||||||||||||||||||||||||||    
T  44752618 ggtggcatttaacttgggaaaggagacttctttcccaccataggaaaatctttttttt-accattaaattgagtagtaccaccattgttattatagtcta 44752520  T
Q  374 tccacattatatttgcttcacatcatctctaaccttaacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaatatgaatatccagaaa 473  Q
    |||||| ||||||| |||||||||||||||||||||||||||   ||||||||| ||||||||| ||||||||||||||||||| ||||| ||||| |||    
T  44752519 tccacactatattttcttcacatcatctctaaccttaacaac---aacacactc-tctctcctttgaaaatcaaaacaaaacaacatgaaaatccaaaaa 44752424  T
Q  474 atcttcataatcata-------------atcttcttctctccttttatttttagggaatcatctt 525  Q
    |||||||||||||||             |||||||||||||||||| ||||||||||||||||||    
T  44752423 atcttcataatcataaatcttcatcttcatcttcttctctccttttttttttagggaatcatctt 44752359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 274 - 419
Target Start/End: Complemental strand, 62288 - 62144
Alignment:
Q  274 ggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtcta 373  Q
    |||||||||||| ||||||||| |||||||||||||||||||| || |||         | |||||||||||||||||||||||||||||||||||||||    
T  62288 ggtgacatttaatttgagaaaggagacttctttcccaccataggaaagtcattttttt-atcattagattgagtagtaccaccattgttattatagtcta 62190  T
Q  374 tccacattatatttgcttcacatcatctctaaccttaacaacaaca 419  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||    
T  62189 tccacactatattttcttcacatcatctctaaccttaacatcaaca 62144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 333 - 419
Target Start/End: Complemental strand, 1366603 - 1366517
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaacaaca 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  1366603 accattagattgagtagtaccaccattgttattatagtctatccacactatattttcttcacatcatctctaaccttaacatcaaca 1366517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 333 - 415
Target Start/End: Original strand, 216451 - 216533
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 415  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  216451 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 216533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 333 - 415
Target Start/End: Original strand, 693011 - 693093
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 415  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  693011 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 693093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 333 - 415
Target Start/End: Original strand, 697220 - 697302
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 415  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  697220 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 697302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 333 - 415
Target Start/End: Original strand, 730074 - 730156
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 415  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  730074 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 730156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 333 - 415
Target Start/End: Original strand, 853969 - 854051
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 415  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  853969 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 854051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 62091 - 62047
Alignment:
Q  413 aacaacaacacactcttctctccttcgaaaatcaaaacaaaacaa 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  62091 aacaacaacacactcttctctccttcgaaaatcaaaacaaaacaa 62047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 413 - 456
Target Start/End: Complemental strand, 1366464 - 1366421
Alignment:
Q  413 aacaacaacacactcttctctccttcgaaaatcaaaacaaaaca 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1366464 aacaacaacacactcttctctccttcgaaaatcaaaacaaaaca 1366421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 273 - 419
Target Start/End: Original strand, 13654932 - 13655077
Alignment:
Q  273 aggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtct 372  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||| || |||         ||||||||||||||||||||||||||||||||||||||||    
T  13654932 aggtgacatttaatttgggaaaggagacttctttcccaccataggaaagtctttttttt-accattagattgagtagtaccaccattgttattatagtct 13655030  T
Q  373 atccacattatatttgcttcacatcatctctaaccttaacaacaaca 419  Q
    ||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  13655031 atccacactatattttcttcacatcatctctaaccttaacatcaaca 13655077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 13655129 - 13655177
Alignment:
Q  409 taacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaa 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13655129 taacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaa 13655177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 4553787 - 4553829
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatc 375  Q
    |||||| |||| |||||||||| ||||||||||||||||||||    
T  4553787 accatttgattaagtagtaccatcattgttattatagtctatc 4553829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 274 - 415
Target Start/End: Complemental strand, 9574619 - 9574479
Alignment:
Q  274 ggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtcta 373  Q
    |||| ||||||||||| ||||| |||||||||||||||||||| || |||         ||||||| |||||||||||||||||||||||||||||||||    
T  9574619 ggtggcatttaacttgggaaaggagacttctttcccaccataggaaagtctttttttt-accattaaattgagtagtaccaccattgttattatagtcta 9574521  T
Q  374 tccacattatatttgcttcacatcatctctaaccttaacaac 415  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  9574520 tccacactatattttcttcacatcatctctaaccttaacaac 9574479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 333 - 419
Target Start/End: Complemental strand, 28684222 - 28684136
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaacaaca 419  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||    
T  28684222 accattagattgagtagtaccaccattgttattatagtctagccacactatattttcttcacatcatctctaaccttaacatcaaca 28684136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 333 - 419
Target Start/End: Complemental strand, 47199385 - 47199299
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaacaaca 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||||||| |||||    
T  47199385 accattagattgagtagtaccaccattgttattatagtctatccacacaatattttctttacatcatctctaaccttaacatcaaca 47199299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 333 - 414
Target Start/End: Original strand, 55159238 - 55159319
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaa 414  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  55159238 accattagattgagtagtaccaccattattattatagtctatccacactataatttcttcacatcatctctaaccttaacaa 55159319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 333 - 415
Target Start/End: Complemental strand, 43738463 - 43738381
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 415  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||| | |||||  ||||||| |||| |||||||||||||    
T  43738463 accattagattgagtagtaccaccattattactatagtctatccacactctatttttttcacataatctttaaccttaacaac 43738381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 337 - 415
Target Start/End: Complemental strand, 47524181 - 47524104
Alignment:
Q  337 ttagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 415  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||  ||||||| ||||| ||||||||||||    
T  47524181 ttagattgagtagtaccaccattgttattatagcctatccacactatattt-tttcacattatctccaaccttaacaac 47524104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 409 - 457
Target Start/End: Complemental strand, 28684084 - 28684036
Alignment:
Q  409 taacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaa 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28684084 taacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaa 28684036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 409 - 463
Target Start/End: Complemental strand, 47199247 - 47199193
Alignment:
Q  409 taacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaatatgaa 463  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  47199247 taacaacaacaacacactcttctctccttcgaaaatcaaaacacaacaacatgaa 47199193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 39624246 - 39624195
Alignment:
Q  189 gattctatgaacaaactgataaaattcaagtctcaaatgtagggattctaat 240  Q
    ||||||||| || ||| ||||||||  |||||||||||||||||||||||||    
T  39624246 gattctatggacgaacagataaaatataagtctcaaatgtagggattctaat 39624195  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 47198603 - 47198645
Alignment:
Q  272 gaggtgacatttaacttgagaaagaagacttctttcccaccat 314  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||    
T  47198603 gaggtgacatttaatttgggaaaggagacttctttcccaccat 47198645  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 25371593 - 25371553
Alignment:
Q  274 ggtgacatttaacttgagaaagaagacttctttcccaccat 314  Q
    |||||||||||| ||| ||||| ||||||||||||||||||    
T  25371593 ggtgacatttaatttgggaaaggagacttctttcccaccat 25371553  T

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Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 333 - 415
Target Start/End: Complemental strand, 37874951 - 37874869
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 415  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  37874951 accattagattgattagtaccatcattgttattatagtctatccacactatattttcttcacatcatctctaaccttaacaac 37874869  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 273 - 387
Target Start/End: Complemental strand, 35616824 - 35616710
Alignment:
Q  273 aggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtct 372  Q
    ||||| ||||||||||| ||||| |||||||||||||||||| | || |||         ||||||||||||||||||||||||||||||||||||||||    
T  35616824 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagtctttttttttaccattagattgagtagtaccaccattgttattatagtct 35616725  T
Q  373 atccacattatattt 387  Q
    ||||||| |||||||    
T  35616724 atccacactatattt 35616710  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 48870743 - 48870689
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatattt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48870743 accattagattgagtagtaccaccattgttattatagtctatccacactatattt 48870689  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 17494470 - 17494522
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatat 385  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  17494470 accattagattgaatagtaccaccattgttattatagtctatccacactatat 17494522  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 48869760 - 48869809
Alignment:
Q  265 caaaagagaggtgacatttaacttgagaaagaagacttctttcccaccat 314  Q
    ||||||||||||||||||||||||| ||||| |||||||||| |||||||    
T  48869760 caaaagagaggtgacatttaacttgggaaaggagacttcttttccaccat 48869809  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 37874064 - 37874104
Alignment:
Q  274 ggtgacatttaacttgagaaagaagacttctttcccaccat 314  Q
    |||||||||||||||| ||||  ||||||||||||||||||    
T  37874064 ggtgacatttaacttgggaaatgagacttctttcccaccat 37874104  T

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Target: scaffold1037 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 2888 - 2807
Alignment:
Q  334 ccattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||  ||| ||||||||||||||||||||||    
T  2888 ccattagattgagtagtaccaccattgttattatagtctatccacactctatttttttcgcatcatctctaaccttaacaac 2807  T

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Target: scaffold1031 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 3007 - 2926
Alignment:
Q  334 ccattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||  ||| ||||||||||||||||||||||    
T  3007 ccattagattgagtagtaccaccattgttattatagtctatccacactctatttttttcgcatcatctctaaccttaacaac 2926  T

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Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 338 - 415
Target Start/End: Complemental strand, 5277380 - 5277303
Alignment:
Q  338 tagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 415  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||    
T  5277380 tagattaagtagtaccaccattgttattatagtctatccacactatattttcttcacatcatctccaaccttaacaac 5277303  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 36475841 - 36475917
Alignment:
Q  337 ttagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 415  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||| ||||||||||||    
T  36475841 ttagattgagtagtaccaccattgttattatagtctatccacactatattt--ttcacatcatctccaaccttaacaac 36475917  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 5276459 - 5276505
Alignment:
Q  268 aagagaggtgacatttaacttgagaaagaagacttctttcccaccat 314  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  5276459 aagagaggtggcatttaacttgggaaaggagacttctttcccaccat 5276505  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 28104999 - 28105061
Alignment:
Q  189 gattctatgaacaaactgataaaattcaagtctcaaatgtagggattctaataattttgaata 251  Q
    ||||||||| || ||| ||||||||  || |||||| |||||||||||||||||||| |||||    
T  28104999 gattctatggacgaaccgataaaatcaaaatctcaagtgtagggattctaataatttagaata 28105061  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 17227938 - 17227884
Alignment:
Q  333 accattagattgagtagtaccaccattgttattatagtctatccacattatattt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17227938 accattagattgagtagtaccaccattgttattatagtctatccacactatattt 17227884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 24094287 - 24094336
Alignment:
Q  202 aactgataaaattcaagtctcaaatgtagggattctaataattttgaata 251  Q
    ||||||||||||  ||||||||| ||||||||||||||| |||| |||||    
T  24094287 aactgataaaatctaagtctcaagtgtagggattctaattatttagaata 24094336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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