View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13721_low_20 (Length: 210)

Name: NF13721_low_20
Description: NF13721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13721_low_20
NF13721_low_20
[»] chr6 (35 HSPs)
chr6 (1-191)||(26876551-26876741)
chr6 (72-190)||(26952597-26952715)
chr6 (77-188)||(27657795-27657907)
chr6 (81-191)||(26887783-26887893)
chr6 (72-190)||(27715550-27715668)
chr6 (72-188)||(26851522-26851638)
chr6 (77-191)||(26626120-26626237)
chr6 (77-148)||(26659009-26659080)
chr6 (77-191)||(26732097-26732214)
chr6 (77-148)||(26764980-26765051)
chr6 (72-179)||(26805525-26805632)
chr6 (72-173)||(26649481-26649585)
chr6 (72-173)||(26755449-26755553)
chr6 (77-191)||(27590184-27590298)
chr6 (77-149)||(28789399-28789471)
chr6 (72-158)||(26061590-26061674)
chr6 (72-158)||(26081560-26081644)
chr6 (58-152)||(26826911-26827005)
chr6 (77-166)||(31287600-31287692)
chr6 (77-153)||(25077042-25077118)
chr6 (77-188)||(26638398-26638512)
chr6 (77-188)||(26744364-26744478)
chr6 (77-172)||(27674613-27674708)
chr6 (78-191)||(26962089-26962202)
chr6 (72-164)||(27662422-27662517)
chr6 (77-117)||(27528711-27528751)
chr6 (77-149)||(28795423-28795495)
chr6 (57-152)||(25491184-25491279)
chr6 (74-117)||(27425029-27425072)
chr6 (77-191)||(27608165-27608282)
chr6 (77-191)||(27681948-27682062)
chr6 (77-148)||(28246414-28246485)
chr6 (77-158)||(28142674-28142755)
chr6 (113-157)||(26808488-26808532)
chr6 (88-148)||(28525284-28525344)
[»] chr4 (7 HSPs)
chr4 (72-166)||(18696500-18696594)
chr4 (54-191)||(18652551-18652694)
chr4 (54-191)||(18676633-18676776)
chr4 (74-117)||(18076483-18076526)
chr4 (72-148)||(18686694-18686770)
chr4 (72-148)||(18721165-18721241)
chr4 (72-166)||(18728590-18728690)
[»] chr1 (4 HSPs)
chr1 (77-166)||(265380-265469)
chr1 (72-164)||(28124681-28124773)
chr1 (58-148)||(26139022-26139112)
chr1 (66-164)||(28129706-28129804)
[»] scaffold0349 (1 HSPs)
scaffold0349 (72-190)||(16277-16395)
[»] scaffold0419 (1 HSPs)
scaffold0419 (77-149)||(10549-10621)
[»] scaffold0277 (2 HSPs)
scaffold0277 (77-149)||(1762-1834)
scaffold0277 (77-149)||(10728-10800)
[»] chr8 (1 HSPs)
chr8 (77-151)||(29270891-29270965)
[»] scaffold0003 (1 HSPs)
scaffold0003 (74-117)||(62291-62334)
[»] chr2 (1 HSPs)
chr2 (72-155)||(17990186-17990269)
[»] scaffold0038 (1 HSPs)
scaffold0038 (77-148)||(46576-46647)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 26876741 - 26876551
Alignment:
Q  1 cagccattgacaaacaaattgactcttacgctaatcacatcattacaaaatccaagaagaacaatagaacgtataaaagggatctttttacgaaaccaga 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876741 cagccattgacaaacaaattgactcttacgttaatcacatcattacaaaatccaagaagaacaatagaacgtataaaagggatctttttacgaaaccaga 26876642  T
Q  101 aagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaatataggtgcatccagcctc 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876641 aagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaatataggtgcatccagcctc 26876551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 26952715 - 26952597
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaaga 171  Q
    |||| ||||||||||| |||||||||||||||||||||| | |||| || ||||||| |  ||||| ||||||||||||||||||  |||||||| | ||    
T  26952715 tatagaagggatctttctacgaaaccagaaagaaattgtgtctcccctggtttggtgctcaaaccaatctggaatcccctctgttttgtttgggaaatga 26952616  T
Q  172 atataggtgcatccagcct 190  Q
    |||||||||||||||||||    
T  26952615 atataggtgcatccagcct 26952597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 27657795 - 27657907
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgt-cccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaatat 175  Q
    |||||||||||||||||||||||||||||||||| | | ||| |||||||||| | | |||| ||||||||||||||| || |||||| || | ||||||    
T  27657795 aagggatctttttacgaaaccagaaagaaattgtatctccccctgatttggtgctcgtaccaatctggaatcccctcttttacgtttgagaaacgaatat 27657894  T
Q  176 aggtgcatccagc 188  Q
     ||||||||||||    
T  27657895 cggtgcatccagc 27657907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 26887893 - 26887783
Alignment:
Q  81 gatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaatataggtg 180  Q
    ||||| |||||||||||||||||||| ||| |||||| || ||||||| |  ||||| ||||||||||||||| |||||||||||| |||||  |  |||    
T  26887893 gatctctttacgaaaccagaaagaaagtgtgtgtcccctgctttggtgctcaaaccaatctggaatcccctctcttccgtttgggaaaagaaactctgtg 26887794  T
Q  181 catccagcctc 191  Q
    |||||||||||    
T  26887793 catccagcctc 26887783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 27715550 - 27715668
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaaga 171  Q
    |||| ||||||| | ||||||||||||||||||||||||  ||||| || ||||||| |  ||||| ||||| ||||| ||||||||||||||||    |    
T  27715550 tatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttgggaattta 27715649  T
Q  172 atataggtgcatccagcct 190  Q
    |||||||||||||||||||    
T  27715650 atataggtgcatccagcct 27715668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 26851638 - 26851522
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaaga 171  Q
    |||| ||||||||||||||||||||||||| |||||||| | | || || ||||||| | |||||| ||||||||||| ||||||||| |||| | || |    
T  26851638 tatagaagggatctttttacgaaaccagaaggaaattgtgttttccctgctttggtgctcgaaccaatctggaatcccttctgttccgcttggcaaaata 26851539  T
Q  172 atataggtgcatccagc 188  Q
    |||| ||| ||||||||    
T  26851538 atattggtacatccagc 26851522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 26626237 - 26626120
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaat 173  Q
    |||||||||||||||||||||||||||||||||   | |||||| ||||||| || | |||||| ||||||||||||||| |  ||||  ||| | ||||    
T  26626237 aagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctctttggcgttatggaaacgaat 26626138  T
Q  174 ataggtgcatccagcctc 191  Q
    || |||||||||||||||    
T  26626137 attggtgcatccagcctc 26626120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 26659080 - 26659009
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 148  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||| ||||| ||||    
T  26659080 aagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcc 26659009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 26732214 - 26732097
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaat 173  Q
    |||||||||||||||||||||||||||||||||   | |||||| ||||||| || | |||||| ||||||||||||||| |  ||||  ||| | ||||    
T  26732214 aagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctctttggcgttatggaaacgaat 26732115  T
Q  174 ataggtgcatccagcctc 191  Q
    || |||||||||||||||    
T  26732114 attggtgcatccagcctc 26732097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 26765051 - 26764980
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 148  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||| ||||| ||||    
T  26765051 aagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcc 26764980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 26805632 - 26805525
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaaga 171  Q
    |||| ||||||| | ||||||||||||||||||||||||  ||||| || ||||||| |  ||||| ||||| |||||||||||||||||||||| || |    
T  26805632 tatagaagggatttctttacgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctggtatcccctctgttccgtttgggaaaaca 26805533  T
Q  172 atataggt 179  Q
    | ||||||    
T  26805532 aaataggt 26805525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 26649585 - 26649481
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgt---gatttggtgttggaaccagtctggaatcccctctgttccgtttgggaga 168  Q
    |||| ||||||| |||||||||||||| ||||||||||| | |||| |   ||||||||||| |||||| ||||||||||||||| |||||||||| | |    
T  26649585 tatagaagggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctggaatcccctctattccgtttggcata 26649486  T
Q  169 agaat 173  Q
    |||||    
T  26649485 agaat 26649481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 26755553 - 26755449
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgt---gatttggtgttggaaccagtctggaatcccctctgttccgtttgggaga 168  Q
    |||| ||||||| |||||||||||||| ||||||||||| | |||| |   ||||||||||| |||||| ||||||||||||||| |||||||||| | |    
T  26755553 tatagaagggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctggaatcccctctattccgtttggcata 26755454  T
Q  169 agaat 173  Q
    |||||    
T  26755453 agaat 26755449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 27590184 - 27590298
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaatata 176  Q
    ||||||| | |||||||||||||||||||||||| | |||| || ||||||| |  ||||| ||||| |||||||||||||||||||||| |  || |||    
T  27590184 aagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccctctgttccgtttgggaaataaaaata 27590283  T
Q  177 ggtgcatccagcctc 191  Q
     ||||||| ||||||    
T  27590284 agtgcatcgagcctc 27590298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 28789471 - 28789399
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 149  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| | |||||| |||||||||||    
T  28789471 aagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 28789399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 26061674 - 26061590
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttcc 158  Q
    |||| ||||||| | |||||||||||||||| |||||||  |||||||||||||||| |  ||||| ||||||||||||||||||||    
T  26061674 tatagaagggatttatttacgaaaccagaaaaaaattgt--gtcccgtgatttggtgctttaaccaatctggaatcccctctgttcc 26061590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 26081644 - 26081560
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttcc 158  Q
    |||| ||||||| | |||||||||||||||| |||||||  |||||||||||||||| |  ||||| ||||||||||||||||||||    
T  26081644 tatagaagggatttatttacgaaaccagaaaaaaattgt--gtcccgtgatttggtgctttaaccaatctggaatcccctctgttcc 26081560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 26827005 - 26826911
Alignment:
Q  58 agaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctc 152  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||||||||| | |||  || ||||||| |  ||||  ||||||||||||||    
T  26827005 agaataatagaacgtatagaagggatttttttacgaaaccagaaagaaattgtgtctcctctgctttggtgctcaaaccgatctggaatcccctc 26826911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 31287692 - 31287600
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 166  Q
    ||||||||||||||||||||||||||| |||||   |||||||| |||||||||| |  ||||| | ||||||||| |||||||| |||||||    
T  31287692 aagggatctttttacgaaaccagaaagtaattgtgctttgtcccctgatttggtgctcaaaccaatttggaatcccatctgttccatttggga 31287600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 25077118 - 25077042
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctct 153  Q
    ||||||||||||| |||||||||||||||||||| | ||||   |||||||| | |||||| |||||||||||||||    
T  25077118 aagggatctttttgcgaaaccagaaagaaattgtgtctccctccatttggtgctcgaaccaatctggaatcccctct 25077042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 26638512 - 26638398
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgt---ttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaat 173  Q
    ||||||||||||||||||||||||||||||||||    |||||| || |||| || | |||||| ||||||||| ||||||||| | |||| | | ||||    
T  26638512 aagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttctggttggaaaacgaat 26638413  T
Q  174 ataggtgcatccagc 188  Q
    ||  |||||||||||    
T  26638412 atcagtgcatccagc 26638398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 26744478 - 26744364
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgt---ttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaat 173  Q
    ||||||||||||||||||||||||||||||||||    |||||| || |||| || | |||||| ||||||||| ||||||||| | |||| | | ||||    
T  26744478 aagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttctggttggaaaacgaat 26744379  T
Q  174 ataggtgcatccagc 188  Q
    ||  |||||||||||    
T  26744378 atcagtgcatccagc 26744364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 27674613 - 27674708
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaa 172  Q
    ||||||| | |||||||||||||||||||||||| | |||| || ||||||| |  ||||| ||||| ||||||||| || ||||||||| |||||    
T  27674613 aagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccctctttttcgtttgggaaaagaa 27674708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 26962202 - 26962089
Alignment:
Q  78 agggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaatatag 177  Q
    |||||||||||| ||| |||||||||||| ||| | |||| |  ||||||| |  ||||| ||||||||||||||  |||||||||||| |  ||| | |    
T  26962202 agggatctttttgcgataccagaaagaaaatgtgtctccctttctttggtgctcaaaccaatctggaatcccctcacttccgtttgggaaactaatcttg 26962103  T
Q  178 gtgcatccagcctc 191  Q
    ||||||||||||||    
T  26962102 gtgcatccagcctc 26962089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 27662422 - 27662517
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgg 164  Q
    |||| |||||||||||||||  ||||||||||||||||   | |||||| ||| ||| || | |||||| ||||||||||||||||||||| ||||    
T  27662422 tatagaagggatctttttacataaccagaaagaaattgagttgtgtcccctgacttgatgctcgaaccaatctggaatcccctctgttccggttgg 27662517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 27528711 - 27528751
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtccc 117  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  27528711 aagggatctttttacgaaaccagaaagaaattgtgtgtccc 27528751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 28795495 - 28795423
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 149  Q
    ||||||||||||||| ||||||||| |||||||| | |||| || ||||||| | |||||| |||||||||||    
T  28795495 aagggatctttttacaaaaccagaaggaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 28795423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 25491184 - 25491279
Alignment:
Q  57 aagaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctc 152  Q
    |||||||||| ||| |||  ||||||| | ||||| ||||||||||||||||||  ||||| | |||||||| | |||||| |||||||| |||||    
T  25491184 aagaacaatacaacttattgaagggatttctttacaaaaccagaaagaaattgtccgtcccctaatttggtgctcgaaccaatctggaattccctc 25491279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 27425029 - 27425072
Alignment:
Q  74 taaaagggatctttttacgaaaccagaaagaaattgtttgtccc 117  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  27425029 taaaagggatctttttacgaaaccagaaagaaatggtgtgtccc 27425072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 27608165 - 27608282
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc---ctctgttccgtttgggagaagaat 173  Q
    ||||||| | |||||||||||||||||||| |||  ||||| || ||||||| |  ||||| ||||| |||||   |||||||||||||||||    ||     
T  27608165 aagggatttctttacgaaaccagaaagaaagtgtgagtcccctgctttggtgctcaaaccaatctggtatcccctgctctgttccgtttgggaattcaaa 27608264  T
Q  174 ataggtgcatccagcctc 191  Q
    ||||||||||||||||||    
T  27608265 ataggtgcatccagcctc 27608282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 27682062 - 27681948
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaatata 176  Q
    ||||||| | |||||||||||||||||||||| |  ||||| || ||||||| |  ||||| ||||| ||||||||| |||| ||||||| |  ||| |     
T  27682062 aagggatttctttacgaaaccagaaagaaattatgggtcccctgctttggtgctcaaaccaatctggtatcccctctcttccatttgggaaataaatctt 27681963  T
Q  177 ggtgcatccagcctc 191  Q
    ||||||||| |||||    
T  27681962 ggtgcatcccgcctc 27681948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 28246485 - 28246414
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 148  Q
    |||||| ||| ||||||||||| ||||||||||| |||||| || ||||||| |  ||||| ||||||||||    
T  28246485 aagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 28246414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 28142755 - 28142674
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttcc 158  Q
    |||||| ||||| |||||||||||||| ||||| | ||||| || ||||||| |  ||||| ||||||||||  ||||||||    
T  28142755 aagggaacttttcacgaaaccagaaagtaattgatggtcccttgctttggtgctcaaaccactctggaatcctttctgttcc 28142674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 26808532 - 26808488
Alignment:
Q  113 gtcccgtgatttggtgttggaaccagtctggaatcccctctgttc 157  Q
    ||||| |||||||||| | |||||| |||||||||||||||||||    
T  26808532 gtcccttgatttggtgctcgaaccaatctggaatcccctctgttc 26808488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 28525344 - 28525284
Alignment:
Q  88 ttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 148  Q
    ||||||||||| ||||||||||| |||||| || ||||||| |  ||||| ||||||||||    
T  28525344 ttacgaaaccaaaaagaaattgtatgtcccatgttttggtgatcaaaccactctggaatcc 28525284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 18696500 - 18696594
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 166  Q
    |||| |||||||||||||||| |||||||||||||||| ||| ||| || |||| || | |||||| ||||||||||||||||||||||||||||    
T  18696500 tatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcccctctgttccgtttggga 18696594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 54 - 191
Target Start/End: Original strand, 18652551 - 18652694
Alignment:
Q  54 aagaagaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctgg------aatc 147  Q
    ||||| || |||||||  |||| |||||||||||||||| |||||||||||||||| ||| ||| || |||| || | |||||| |||||      ||||    
T  18652551 aagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcctaatc 18652650  T
Q  148 ccctctgttccgtttgggagaagaatataggtgcatccagcctc 191  Q
    ||||||||||||||||||| |  ||||| |||||| ||||||||    
T  18652651 ccctctgttccgtttgggaaacaaatattggtgcacccagcctc 18652694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 54 - 191
Target Start/End: Original strand, 18676633 - 18676776
Alignment:
Q  54 aagaagaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc----- 148  Q
    ||||| || |||||||  |||| |||||||||||||||| |||||||||||||||| ||| ||| || |||| || | |||||| ||||||||||         
T  18676633 aagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcctaatc 18676732  T
Q  149 -cctctgttccgtttgggagaagaatataggtgcatccagcctc 191  Q
     |||||||||||||||||| |  ||||| |||||| ||||||||    
T  18676733 tcctctgttccgtttgggaaacaaatattggtgcacccagcctc 18676776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 18076526 - 18076483
Alignment:
Q  74 taaaagggatctttttacgaaaccagaaagaaattgtttgtccc 117  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  18076526 taaaagggatctttttacgaaaccagaaagaaatggtgtgtccc 18076483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 18686694 - 18686770
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 148  Q
    |||| |||||||||||||||  |||||||||||||||| ||| ||| || |||| || | |||||| ||||||||||    
T  18686694 tatagaagggatctttttacagaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18686770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 18721165 - 18721241
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 148  Q
    |||| |||||||||||||||  ||||||||||||||||  || ||| || ||||||| | |||||| ||||||||||    
T  18721165 tatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttggtgctcgaaccaatctggaatcc 18721241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 18728590 - 18728690
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc------cctctgttccgtttggg 165  Q
    |||| |||||||||||||||  ||||||||||||||||  || ||| || |||| || | |||||| ||||||||||      |||||||||||||||||    
T  18728590 tatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttggg 18728689  T
Q  166 a 166  Q
    |    
T  18728690 a 18728690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 265380 - 265469
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 166  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| |  ||||| ||||| ||||||||||||||||||||||    
T  265380 aagggatctttttacgaaaccagaaagaaattgtgtttcccttgctttggtgctcaaaccaatctggtatcccctctgttccgtttggga 265469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 28124681 - 28124773
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgg 164  Q
    |||| ||||||| | ||||||||||||||||||||  || ||| ||  | |||||||||||||||| || ||||||||||| |||||| ||||    
T  28124681 tatagaagggatttctttacgaaaccagaaagaaacagtatgttcccagttttggtgttggaaccaatcaggaatcccctcagttccggttgg 28124773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 26139112 - 26139022
Alignment:
Q  58 agaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 148  Q
    |||| |||||||| |||| ||||||| ||||||| |||||||||||||||||| || |||  |  |||||| | |||||| ||||||||||    
T  26139112 agaaaaatagaacttatagaagggatttttttacaaaaccagaaagaaattgtctgccccccggattggtgctcgaaccaatctggaatcc 26139022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 28129706 - 28129804
Alignment:
Q  66 agaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgg 164  Q
    ||||| |||| ||||||| | ||||||||||||||||||||  || ||||||  | ||||||||| ||| || || ||||||||||| |||||| ||||    
T  28129706 agaacttatagaagggatttctttacgaaaccagaaagaaacagtatgtccccagctttggtgttcgaaacaatcaggaatcccctcagttccggttgg 28129804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 16395 - 16277
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaaga 171  Q
    |||| ||||||| | ||||||||||||||||||||||||  ||||| || ||||||| |  ||||| ||||| ||||| ||||||||||||||||    |    
T  16395 tatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttgggaattta 16296  T
Q  172 atataggtgcatccagcct 190  Q
    |||||||||||||||||||    
T  16295 atataggtgcatccagcct 16277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 10621 - 10549
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 149  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| | |||||| |||||||||||    
T  10621 aagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 10549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 1762 - 1834
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 149  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| | |||||| |||||||||||    
T  1762 aagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 1834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 10728 - 10800
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 149  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| | |||||| |||||||||||    
T  10728 aagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 10800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 29270891 - 29270965
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccct 151  Q
    ||||||| | ||||||||||||||||||||||||  ||||| || ||||||||| |||||| ||||| |||||||    
T  29270891 aagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgttcgaaccaatctggtatcccct 29270965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 62334 - 62291
Alignment:
Q  74 taaaagggatctttttacgaaaccagaaagaaattgtttgtccc 117  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  62334 taaaagggatctttttacgaaaccagaaagaaatggtgtgtccc 62291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 17990186 - 17990269
Alignment:
Q  72 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgt 155  Q
    |||| ||||||| | |||||||||||||||||||||||| || ||| || ||||||| |  ||||| ||||||||||| |||||    
T  17990186 tatagaagggatttctttacgaaaccagaaagaaattgtgtgccccctgctttggtgctcaaaccaatctggaatcccttctgt 17990269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 46647 - 46576
Alignment:
Q  77 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 148  Q
    |||||| ||| ||||||||||| ||||||||||| |||||| || ||||||| |  ||||| ||||||||||    
T  46647 aagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 46576  T

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