View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13721_low_3 (Length: 520)
Name: NF13721_low_3
Description: NF13721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13721_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 36643548 - 36643067
Alignment:
| Q |
19 |
ccaccatctcttccttttacaaatttgattccataaggttggtcaatctctacctcatactcttcatatggctctttttctccttcacccttttcactat |
118 |
Q |
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| T |
36643548 |
ccaccatctcttccttttacaaacttgattccataaggttggtcaatctctacctcatactcttcatatggctctttttctccttcacccttttcactat |
36643449 |
T |
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| Q |
119 |
cttctttggatgcatctgaacccacttcagatgaagctttaaccacataaaggaatggttttgacaaaagggtgttggaaaatgaatggttttttgaaga |
218 |
Q |
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| T |
36643448 |
cttctttggatgcatctgaacccacttcagatgaagctttaaccacataaaggaatggttttgacaaaagggtgttggaaaatgaatggttttttgaaga |
36643349 |
T |
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| Q |
219 |
aaacaacttggtgtttggnnnnnnntaagttgggttttgcttagagttgatttgggtggttcttgttggcaatgaaagtgcagtgtagtgaccactagtg |
318 |
Q |
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| T |
36643348 |
aaacaacttggtgtttggaaaaaaataagttgggttttgcttagagttgatttgggtggttcttgttggcaatgaaagtgcagtgtagtgaccactagtg |
36643249 |
T |
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| Q |
319 |
gtggtagacatagataatgacatggttatgttaagctcaaaacttcgatgttccttttgaattctatcagagaaatgttatgttcctttgagcataggta |
418 |
Q |
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| T |
36643248 |
gtggtggacatagataatgacatggt--tgttaagctcagaacttcgatgttccttttgaattctatgagagaaatgttatgttcctttgagca----ta |
36643155 |
T |
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| Q |
419 |
ggttaccacaaagaagaagatgagaggttctgtgtagattttgctgaagtggctctcaaggcacatccattcaattcgctagtattat |
506 |
Q |
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| T |
36643154 |
ggttaccacaaagaagaagatgagaggttctgtgtagattttgctgaagtggctctcaaggcacatccattcaattcactagtattat |
36643067 |
T |
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Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 10883209 - 10883285
Alignment:
| Q |
269 |
tttgggtggttcttgttggcaatgaaagtgcagtgtagtgaccactagtggtggtagacatagataatgacatggtt |
345 |
Q |
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| T |
10883209 |
tttggatggttctggttggcaatgtaagtccaaagtagtgaccactagtggtggtaaacatagataatgacatggtt |
10883285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 504
Target Start/End: Original strand, 10883688 - 10883734
Alignment:
| Q |
458 |
tttgctgaagtggctctcaaggcacatccattcaattcgctagtatt |
504 |
Q |
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| T |
10883688 |
tttgctgaagtggttctcaaggcacatccattcaattcactggtatt |
10883734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 43172500 - 43172570
Alignment:
| Q |
254 |
tttgcttagagttgatttgggtggttcttgttggcaatgaaagtgcagtgtagt----gaccactagtggt |
320 |
Q |
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| T |
43172500 |
tttgcttagagtggatttgggtggttcttgttggcaatgaaagtgcagggtagttagtgaccactagtggt |
43172570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 43172396 - 43172466
Alignment:
| Q |
120 |
ttctttggatgcatctgaacccacttcagatgaagctttaaccacataaaggaatggttttgacaaaaggg |
190 |
Q |
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| T |
43172396 |
ttctttggatgcttttgaccaaacctcacatgaagctttatccacaaataggaatggttttgacaaaaggg |
43172466 |
T |
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