View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13721_low_6 (Length: 466)
Name: NF13721_low_6
Description: NF13721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13721_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Complemental strand, 38841570 - 38841153
Alignment:
| Q |
19 |
aggttcaactgaaaaacacactcaaaatctatgggtttacgaaaacgaagaaatggttcaccgttctgtttcctacgttcctggactttacaaaatcttc |
118 |
Q |
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| T |
38841570 |
aggttcaactgaaaaacacactcaaaatctatgggtttacgaaaacgaagaaatggttcaccgttctgtttcctacgttcctggactttacaaaatcttt |
38841471 |
T |
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| Q |
119 |
gatgagattctccttgacgccaccaagagagatccgtccatggattcactcaaagttacaatcgaaccggaagtgaatacagtttcagtttataataatg |
218 |
Q |
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| T |
38841470 |
gacgagattctccttgacgccaccaagagagatccgtccatggattcgctcaaagttacaatcgaaccggaagggaatacagtttcagtttataataatg |
38841371 |
T |
|
| Q |
219 |
gtgacagtgttccagtagggcttcataaggaagagaatgtttatgttcctgaattgttctttggtcaccttaactatgattataatgtgaagaaaactac |
318 |
Q |
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| T |
38841370 |
gtgaaggtgttccagtagggcttcataaggaagagaatgtttatgttcctgaattgttctttggtcaccttaactatgattataatgtgaagaaaactac |
38841271 |
T |
|
| Q |
319 |
tggtgggagaaatggttatggtgctaagctcaccaatattttttcgaaggagtttgttattgagattgttgatggacgtcgtttgaagaagtataagcag |
418 |
Q |
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| T |
38841270 |
tggtgggagaaatggttatggtgctaagctcaccaatattttttcgaaggagtttgttattgagattgttgatggacgtcgtttgaagaagtataagcag |
38841171 |
T |
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| Q |
419 |
gtagtgatttgttgattt |
436 |
Q |
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| T |
38841170 |
gtagtgatttgttgattt |
38841153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 9877659 - 9877231
Alignment:
| Q |
20 |
ggttcaactgaaaaacacactcaaaatctatgggtttacgaaaacgaagaaatggttcaccgttctgtttcctacgttcctggactttacaaaatcttcg |
119 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| || || ||||| ||||||| |
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| T |
9877659 |
ggttcaattgaaaaacacactcaaaatctatgggtttacgaaaacgaagaaatggttaaccgttcaatctcctacgttcccggtctctacaagatcttcg |
9877560 |
T |
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| Q |
120 |
atgagattctccttgacgc---------caccaagagagatccgtccatggattcactcaaagttacaatcgaaccggaagtgaatacagtttcagttta |
210 |
Q |
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| T |
9877559 |
acgagattctcgtcaatgctgctgataacaaacagcgagatccatccatggattcgttgaaagtaacgatcgatcctgaggcgaatacggtttctgttta |
9877460 |
T |
|
| Q |
211 |
taataatggtgacagtgttccagtagggcttcataaggaagagaatgtttatgttcctgaattgttctttggtcacctt------------aactatgat |
298 |
Q |
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| T |
9877459 |
caataacggtgacggtgttccggttgagattcatcaagaagagaaggtttatgttccggagttgatttttggtcatcttcttacgagtagtaattatgac |
9877360 |
T |
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| Q |
299 |
tataatgtgaagaaaactactggtgggagaaatggttatggtgctaagctcaccaatattttttcgaaggagtttgttattgagattgttgatggacgtc |
398 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||| |||||||||||||| | || ||||||||| |
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| T |
9877359 |
gataatgtgaagaaaactactggtggaagaaacggttatggtgctaagctcacgaatattttctcgactgagtttgttattgaaactgctgatggacgga |
9877260 |
T |
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| Q |
399 |
gtttgaagaagtataagcaggtagtgatt |
427 |
Q |
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| T |
9877259 |
ggttgaagaagtataagcaggtagtgatt |
9877231 |
T |
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