View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13721_low_7 (Length: 443)
Name: NF13721_low_7
Description: NF13721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13721_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 427
Target Start/End: Original strand, 27629692 - 27630134
Alignment:
| Q |
10 |
atatagacacaaaattactacatcgtcat------tcaatatacaatagtgcaagacctgatggtaacaattgcctaagaaacataatcatcacataat- |
102 |
Q |
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| T |
27629692 |
atatagacacaaaattactacatcgtcatcgtcattcaatacacaatagtgcaagacctgatggtaacaattgcctaagaaacataatcatcacataatt |
27629791 |
T |
|
| Q |
103 |
---ggaccttagctcaataacctaccaaaatgaaagatcaaatcttatcagatatgaataaattaattaatgactttgaaaattcaaactactacacagc |
199 |
Q |
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| T |
27629792 |
aatggaccttagctcaataacctaccaaaaggaaagatcaaatcttatcatatatgaataaatt----aatgactttgaaaattcaaactactacacagc |
27629887 |
T |
|
| Q |
200 |
agtggttaggacatgcatgtgaaggaaggcccacttat----------aaaaactaatcatatctttttgattgattagtgatgaaatctggataagttt |
289 |
Q |
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| T |
27629888 |
agtggttaggacatgcatgtgaaggaaggcccacttatatataattaaaaaaactaatgatatctttttgattgattagtgatgaaatctggataagttt |
27629987 |
T |
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| Q |
290 |
aattgaaaaagaaggaatggaacaccatacggttgttaattgttggttacttaatttaggtacatgcgttccttacttccttccttccggtttcctcatc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27629988 |
aattgaaaaagaaggaatggaacaccatacggttgttaattgttggttacttaatttaggtacatgcgttccttacttccttccttccggtttcctcatc |
27630087 |
T |
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| Q |
390 |
tagtagtaacat---------tgccacaccatatccttagtcatacc |
427 |
Q |
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| T |
27630088 |
tagtagtaacatcaaaatctatgccacaccatatccttagtcatacc |
27630134 |
T |
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