View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13722_high_1 (Length: 825)

Name: NF13722_high_1
Description: NF13722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13722_high_1
NF13722_high_1
[»] chr8 (12 HSPs)
chr8 (1-410)||(20171335-20171742)
chr8 (427-809)||(20171778-20172162)
chr8 (471-678)||(11428184-11428391)
chr8 (537-787)||(8150449-8150698)
chr8 (471-787)||(10186224-10186538)
chr8 (537-767)||(4138252-4138488)
chr8 (703-809)||(11428078-11428184)
chr8 (681-751)||(918949-919019)
chr8 (477-547)||(9083125-9083194)
chr8 (476-547)||(32663981-32664051)
chr8 (459-520)||(31686143-31686202)
chr8 (471-520)||(12274210-12274259)
[»] chr7 (12 HSPs)
chr7 (1-410)||(44393045-44393452)
chr7 (427-809)||(44393488-44393872)
chr7 (537-809)||(47233754-47234029)
chr7 (602-809)||(5767996-5768206)
chr7 (602-809)||(25419507-25419717)
chr7 (602-787)||(39066825-39067012)
chr7 (731-785)||(47932920-47932974)
chr7 (473-514)||(39063960-39064001)
chr7 (471-520)||(39073323-39073372)
chr7 (456-514)||(14755767-14755823)
chr7 (471-520)||(5768330-5768379)
chr7 (471-520)||(25419827-25419876)
[»] chr4 (14 HSPs)
chr4 (485-809)||(5430592-5430919)
chr4 (455-809)||(34737734-34738085)
chr4 (537-809)||(53830437-53830716)
chr4 (456-787)||(21802753-21803080)
chr4 (456-787)||(21632727-21633061)
chr4 (602-809)||(2504933-2505143)
chr4 (550-809)||(2500579-2500838)
chr4 (612-809)||(46092312-46092513)
chr4 (612-809)||(46134837-46135038)
chr4 (570-787)||(20036251-20036467)
chr4 (748-785)||(43943567-43943604)
chr4 (456-520)||(2505253-2505317)
chr4 (462-520)||(43942118-43942174)
chr4 (456-512)||(5874249-5874303)
[»] chr3 (12 HSPs)
chr3 (473-738)||(26215155-26215420)
chr3 (548-809)||(48266211-48266474)
chr3 (537-809)||(35870278-35870553)
chr3 (602-809)||(52349726-52349936)
chr3 (721-809)||(26215432-26215520)
chr3 (456-514)||(346592-346648)
chr3 (731-785)||(54945722-54945776)
chr3 (456-503)||(10179403-10179448)
chr3 (473-520)||(3744474-3744521)
chr3 (471-514)||(33519233-33519276)
chr3 (731-785)||(5884368-5884422)
chr3 (471-520)||(52349555-52349604)
[»] scaffold0516 (2 HSPs)
scaffold0516 (482-786)||(3127-3430)
scaffold0516 (474-575)||(1404-1504)
[»] chr5 (6 HSPs)
chr5 (465-803)||(37301929-37302266)
chr5 (537-809)||(21605001-21605274)
chr5 (602-809)||(36991043-36991253)
chr5 (471-520)||(10180436-10180485)
chr5 (471-512)||(11381255-11381296)
chr5 (479-572)||(11386776-11386869)
[»] chr2 (12 HSPs)
chr2 (537-819)||(41646629-41646912)
chr2 (602-809)||(7574023-7574233)
chr2 (602-809)||(16668618-16668828)
chr2 (681-746)||(43564237-43564302)
chr2 (681-739)||(29455447-29455505)
chr2 (477-547)||(6414329-6414398)
chr2 (471-520)||(22990032-22990081)
chr2 (465-520)||(37904098-37904153)
chr2 (471-520)||(7574355-7574404)
chr2 (471-520)||(16668938-16668987)
chr2 (473-526)||(29455077-29455130)
chr2 (473-526)||(31618575-31618628)
[»] chr1 (7 HSPs)
chr1 (537-809)||(22912463-22912735)
chr1 (602-809)||(13786229-13786439)
chr1 (490-786)||(23725986-23726278)
chr1 (602-806)||(25807706-25807914)
chr1 (456-520)||(29679029-29679095)
chr1 (473-520)||(39621645-39621692)
chr1 (471-520)||(13786058-13786107)
[»] chr6 (6 HSPs)
chr6 (602-809)||(13433385-13433595)
chr6 (699-809)||(16712046-16712155)
chr6 (465-515)||(18877355-18877405)
chr6 (471-520)||(8643585-8643634)
chr6 (471-520)||(13433717-13433766)
chr6 (456-512)||(18882289-18882343)
[»] scaffold0713 (1 HSPs)
scaffold0713 (465-520)||(7356-7411)
[»] scaffold0182 (1 HSPs)
scaffold0182 (731-785)||(10116-10170)
[»] scaffold0045 (1 HSPs)
scaffold0045 (471-512)||(1381-1422)


Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 20171335 - 20171742
Alignment:
Q  1 aatcaaagttgcaatgtataaggaacccaaaacgaatcatatatgtttgtctgctttaaggcaacaattacaaactctttgttgatttgaggttcactta 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20171335 aatcaaagttgcaatgtctaaggaacccaaaacgaatcatatatgtttgt--gctttaaggcaacaattacaaactctttgttgatttgaggttcactta 20171432  T
Q  101 cactgtaacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattgagaatatttgggtcccacgtgcttacgggctagctctaataatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20171433 cactgtaacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattgagaatatttgggtcccacgtgcttacgggctagctctaataatg 20171532  T
Q  201 tacggtgtttgatcccttttcaattgcgtggaattgctgatttgtatgagtgcacgttgattttgcgtgttgagtgcaagttttttagcatggcatatgc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20171533 tacggtgtttgatcccttttcaattgcgtggaattgctgatttgtacgagtgcacgttgattttgcgtgttgagtgcaagttttttagcatggcatatgc 20171632  T
Q  301 atatatatgtgcacctattagagggaaaagttcgaaccattaccttttacctcaaagtttttggtggttgaacagacactatagagtatggtagattaca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  20171633 atatatatgtgcacctattagagggaaaagttcgaaccattaccttttacctcaaagtttttggtggttgaacagatactatagagtatgatagattaca 20171732  T
Q  401 agaatttcaa 410  Q
    ||||||||||    
T  20171733 agaatttcaa 20171742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 427 - 809
Target Start/End: Original strand, 20171778 - 20172162
Alignment:
Q  427 aatgaaatgaaacattggttttggatgacatctctatctctatctctat----atatacatgtattctaaactacattttgtttatgtgtcacttcacta 522  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    ||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  20171778 aatgaaatgaaacattggttttggatgacatctccatctctatctctatctctatatatatgtattttaaactacattttgcttatgtgtcacttcacta 20171877  T
Q  523 atattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcattt 622  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  20171878 atattttctttttgtaactaattttttatacttatgtcatgtggctctcttttgttcttgattctttactagtcatttcttactatctaatctttcattt 20171977  T
Q  623 cccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaa 722  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20171978 cccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggtttcattttaa 20172077  T
Q  723 aattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatatatgttgct 809  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  20172078 aattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca--ttttctaagctcatatatatgttgct 20172162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 471 - 678
Target Start/End: Complemental strand, 11428391 - 11428184
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctct 570  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||| | |||||||||    
T  11428391 tctatatatacatgtattctaagctacattttgcttatgtgtcacctcactaatatttcccttttgtaactaatttttcatacttatgccttgtggctct 11428292  T
Q  571 cttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttac 670  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  11428291 cttttgttcttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactatccatttacttcacttcatggaagttac 11428192  T
Q  671 acaatgaa 678  Q
    ||||||||    
T  11428191 acaatgaa 11428184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 537 - 787
Target Start/End: Complemental strand, 8150698 - 8150449
Alignment:
Q  537 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 636  Q
    |||||||| | ||||||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||    
T  8150698 taactaatctctcatacttatgccatgtgactcacttttgttcttgattctttactagccatttcttactatcta-tctttcatttcccatcagttgcaa 8150600  T
Q  637 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 736  Q
    |||| ||||||| ||||||||| |||  |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  8150599 aaacactccatttacttcactttatgcgagttacacaatgaatgcattataatcaattttattaatattgaggggttacattttaaaattattcatattc 8150500  T
Q  737 ttagtcaatcatcttacacacacaagtttactataaagctcctcatttttt 787  Q
    ||| ||| || ||||||||||||||||||||||||||||||||||||||||    
T  8150499 ttaatcagtcctcttacacacacaagtttactataaagctcctcatttttt 8150449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 471 - 787
Target Start/End: Original strand, 10186224 - 10186538
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctct 570  Q
    |||||||||||||||||||||| |||||||| |  |||||||||| | || |||     | |||  |||||||| | || |||||||| || ||| ||||    
T  10186224 tctatatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatatctcttacttatgccaagtgactct 10186322  T
Q  571 cttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttac 670  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||| ||| ||||||  | |||| || ||||||| || |||||||    
T  10186323 cttttgttcttgattctttactagtcattccttactatcta-tctttcatttcctatcagttgcaaaaacatttcatttacctcacttcttgcaagttac 10186421  T
Q  671 acaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactat 770  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||    
T  10186422 acaatgaatgcattataatccattttattaatattgaggggttacattttaaaattgttcatattcttaatcaatcctcttacacacacaagtttactat 10186521  T
Q  771 aaagctcctcatttttt 787  Q
    |||||||||||||||||    
T  10186522 aaagctcctcatttttt 10186538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 537 - 767
Target Start/End: Original strand, 4138252 - 4138488
Alignment:
Q  537 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatcta------atctttcatttcccatcaa 630  Q
    |||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||  |||||||||      ||||||||||||| |||      
T  4138252 taactaatctctcatacttatgccaagtggctctcttttgttcttgattctttactagccattctctactatctatctttcatctttcatttcctatccg 4138351  T
Q  631 ttggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattc 730  Q
    ||| ||||||  | |||| |||||||||| || ||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||| |||    
T  4138352 ttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatctattttattaatattgaggggttacgttttaaaattgttc 4138451  T
Q  731 atattcttagtcaatcatcttacacacacaagtttac 767  Q
    ||||||||| ||||   ||||||||||||||||||||    
T  4138452 atattcttaatcaagactcttacacacacaagtttac 4138488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 703 - 809
Target Start/End: Complemental strand, 11428184 - 11428078
Alignment:
Q  703 agtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatata 802  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  11428184 agtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacagaagtttacgataaagctcctcattttttctaagctcatatata 11428085  T
Q  803 tgttgct 809  Q
    |||||||    
T  11428084 tgttgct 11428078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 681 - 751
Target Start/End: Complemental strand, 919019 - 918949
Alignment:
Q  681 tattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatctt 751  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  919019 tattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 918949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 547
Target Start/End: Complemental strand, 9083194 - 9083125
Alignment:
Q  477 tatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttt 547  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||| |||| | ||| |||||||||||    
T  9083194 tatacatgtattctaaactacactttgcttatgtgtcacctcactaat-ttttttctttttaactaatttt 9083125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 476 - 547
Target Start/End: Original strand, 32663981 - 32664051
Alignment:
Q  476 atatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttt 547  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||| ||| |||||  ||| |||||||||||    
T  32663981 atatacatgtattctaaactacactttgcttatgtgtcacctcaccaat-ttttccctttctaactaatttt 32664051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 520
Target Start/End: Original strand, 31686143 - 31686202
Alignment:
Q  459 tctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    ||||||||||||||| ||||  ||||||||||||||||||| ||| ||||||||||| ||||    
T  31686143 tctatctctatctctgtata--catgtattctaaactacatattgcttatgtgtcacctcac 31686202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 12274210 - 12274259
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||| ||||    
T  12274210 tctatatatacatgtatgctaagttacattttgtttatgtgtcacctcac 12274259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 44393045 - 44393452
Alignment:
Q  1 aatcaaagttgcaatgtataaggaacccaaaacgaatcatatatgtttgtctgctttaaggcaacaattacaaactctttgttgatttgaggttcactta 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44393045 aatcaaagttgcaatgtctaaggaacccaaaacgaatcatatatgtttgt--gctttaaggcaacaattacaaactctttgttgatttgaggttcactta 44393142  T
Q  101 cactgtaacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattgagaatatttgggtcccacgtgcttacgggctagctctaataatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44393143 cactgtaacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattgagaatatttgggtcccacgtgcttacgggctagctctaataatg 44393242  T
Q  201 tacggtgtttgatcccttttcaattgcgtggaattgctgatttgtatgagtgcacgttgattttgcgtgttgagtgcaagttttttagcatggcatatgc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44393243 tacggtgtttgatcccttttcaattgcgtggaattgctgatttgtacgagtgcacgttgattttgcgtgttgagtgcaagttttttagcatggcatatgc 44393342  T
Q  301 atatatatgtgcacctattagagggaaaagttcgaaccattaccttttacctcaaagtttttggtggttgaacagacactatagagtatggtagattaca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  44393343 atatatatgtgcacctattagagggaaaagttcgaaccattaccttttacctcaaagtttttggtggttgaacagatactatagagtatgatagattaca 44393442  T
Q  401 agaatttcaa 410  Q
    ||||||||||    
T  44393443 agaatttcaa 44393452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 427 - 809
Target Start/End: Original strand, 44393488 - 44393872
Alignment:
Q  427 aatgaaatgaaacattggttttggatgacatctctatctctatctctat----atatacatgtattctaaactacattttgtttatgtgtcacttcacta 522  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    ||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  44393488 aatgaaatgaaacattggttttggatgacatctccatctctatctctatctctatatatatgtattttaaactacattttgcttatgtgtcacttcacta 44393587  T
Q  523 atattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcattt 622  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  44393588 atattttctttttgtaactaattttttatacttatgtcatgtggctctcttttgttcttgattctttactagtcatttcttactatctaatctttcattt 44393687  T
Q  623 cccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaa 722  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44393688 cccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggtttcattttaa 44393787  T
Q  723 aattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatatatgttgct 809  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  44393788 aattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca--ttttctaagctcatatatatgttgct 44393872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 537 - 809
Target Start/End: Complemental strand, 47234029 - 47233754
Alignment:
Q  537 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 636  Q
    |||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| ||| ||    
T  47234029 taactaatctctcatacttatgtcatgtggctatcttttgttcttgattctttactagtcattccttactatcta-tctttcattttccatcagttgcaa 47233931  T
Q  637 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 736  Q
    |||| || |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  47233930 aaacacttcatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattaaggggttacattttaaaattattcatattc 47233831  T
Q  737 ttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgct 809  Q
    ||| |||||| ||||||||||||||||   |||||||||||||||||| |||||| |||||| ||||||||||||||    
T  47233830 ttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttataagcttatatatatgttgct 47233754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 602 - 809
Target Start/End: Complemental strand, 5768206 - 5767996
Alignment:
Q  602 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 701  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||    
T  5768206 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatcaattttattaa 5768108  T
Q  702 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 797  Q
    || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||    
T  5768107 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttat 5768008  T
Q  798 atatatgttgct 809  Q
    ||||||||||||    
T  5768007 atatatgttgct 5767996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 602 - 809
Target Start/End: Complemental strand, 25419717 - 25419507
Alignment:
Q  602 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 701  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  25419717 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 25419619  T
Q  702 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 797  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  25419618 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 25419519  T
Q  798 atatatgttgct 809  Q
    ||||||||||||    
T  25419518 atatatgttgct 25419507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 602 - 787
Target Start/End: Complemental strand, 39067012 - 39066825
Alignment:
Q  602 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 701  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  39067012 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 39066914  T
Q  702 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctcatttttt 787  Q
    || ||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||   ||||||||| ||||||||||||||    
T  39066913 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacatacaagtttattactataaggctcctcatttttt 39066825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 731 - 785
Target Start/End: Complemental strand, 47932974 - 47932920
Alignment:
Q  731 atattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt 785  Q
    ||||| ||| || ||| |||||||||||||||||||||| |||||||||||||||    
T  47932974 atatttttattctatcctcttacacacacaagtttactacaaagctcctcatttt 47932920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 514
Target Start/End: Complemental strand, 39064001 - 39063960
Alignment:
Q  473 tatatatacatgtattctaaactacattttgtttatgtgtca 514  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  39064001 tatatatacatgtattctaacctacattttgcttatgtgtca 39063960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 39073372 - 39073323
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  39073372 tctatatatacatgtattctaacctacactttgcttatgtgtcacctcac 39073323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 514
Target Start/End: Original strand, 14755767 - 14755823
Alignment:
Q  456 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtca 514  Q
    |||||||||||||||||||||  |||||||||||||| ||||| |||| | ||||||||    
T  14755767 atctctatctctatctctata--tacatgtattctaagctacactttgctgatgtgtca 14755823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 5768379 - 5768330
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  5768379 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 5768330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 25419876 - 25419827
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  25419876 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 25419827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 485 - 809
Target Start/End: Original strand, 5430592 - 5430919
Alignment:
Q  485 tattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttcttgat 584  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5430592 tattataaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgccatgtggctctcttttgttcttgat 5430691  T
Q  585 tctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtatt 684  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5430692 tctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtatt 5430791  T
Q  685 ataatccattttat---taatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca 781  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5430792 ataatccattttattaataatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaaactcctca 5430891  T
Q  782 ttttttctaagctcatatatatgttgct 809  Q
    ||||||||||||||||||||||||||||    
T  5430892 ttttttctaagctcatatatatgttgct 5430919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 455 - 809
Target Start/End: Complemental strand, 34738085 - 34737734
Alignment:
Q  455 catctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatact 554  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||||||  |||||||||| | || |||   | | |||  |||||||| | |||||||    
T  34738085 catctctatctctatctctatata--catgtattctaacctacattttgcatatgtgtcaccttaccaatgcctccctttc-taactaatctctcatact 34737989  T
Q  555 tatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttc 654  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||||| ||| |||||| ||||||  |||||    
T  34737988 tatgccatgtggatctcttttgttcttgattctttactagccattccgtacaatcta-tctttcattttccatcagttgcaaaaacactccatctacttc 34737890  T
Q  655 acttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttaca 754  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  34737889 acttcatgcaagttacacaatgaatgcattataatccattttattaacaatgaggggttacattttaaaattattcatattcttgatcaatcctcttaca 34737790  T
Q  755 cacacaagtttactataaagctcctcatt-ttttctaagctcatatatatgttgct 809  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  34737789 cacacaagtttactataaagctcctcatttttttctaagcttatatatatgttgct 34737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 537 - 809
Target Start/End: Complemental strand, 53830716 - 53830437
Alignment:
Q  537 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatcta---atctttcatttcccatcaattg 633  Q
    |||||||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||   ||||||||||| |||||  |||    
T  53830716 taactaatctctcatacttatgccatgtggctatcttttgttcttgattctttactagccgttccttactatctatctatctttcattttccatcggttg 53830617  T
Q  634 gaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcata 733  Q
     |||||| ||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  53830616 caaaaacactctatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcata 53830517  T
Q  734 ttcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgct 809  Q
    |||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  53830516 ttcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgct 53830437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 456 - 787
Target Start/End: Original strand, 21802753 - 21803080
Alignment:
Q  456 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatactt 555  Q
    |||||||||||||||||||||||  |||||||||||| |||||||| |  |||||||||| | || |||     | |||  |||||||| | ||||||||    
T  21802753 atctctatctctatctctatata--catgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatctctcatactt 21802849  T
Q  556 atgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttca 655  Q
    ||| || |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||| ||||||  | |||| ||||||    
T  21802850 atgccaagtggctctcttttgttcttgattctttactagccattcattactatcta-tctttcatttcctatcagttgcaaaaacatttcatttacttca 21802948  T
Q  656 cttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacac 755  Q
    |||| || ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| ||||| |||||||||    
T  21802949 cttcttgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacgttttaaaattgttcatattcttaatcaataatcttacac 21803048  T
Q  756 acacaagtttactataaagctcctcatttttt 787  Q
    ||||||||||||||||||||||||||||||||    
T  21803049 acacaagtttactataaagctcctcatttttt 21803080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 456 - 787
Target Start/End: Complemental strand, 21633061 - 21632727
Alignment:
Q  456 atctctatctctatctctatat----atacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcat 551  Q
    ||||||||||||||||||||||    ||||||||||||||| ||||||||||  |||||||||| | || ||||    | |||  |||||||| | ||||    
T  21633061 atctctatctctatctctatattattatacatgtattctaagctacattttgcctatgtgtcaccttaccaatacccccctttc-taactaatctctcat 21632963  T
Q  552 acttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaa-ctctccattca 650  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| ||| ||||| |  | |||| |    
T  21632962 acttatgccaagtggcgctcttttgttcttgattctttactagccattccttactatcta-tctttcattttctatcagttgcaaaaaacatttcattta 21632864  T
Q  651 cttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatct 750  Q
    ||||||||| || ||||||||| ||||||| ||||| |||||||||||||||| ||||||||||  |||||||||| |||||||||||| |||||| |||    
T  21632863 cttcacttcttgcaagttacacgatgaatgcattatgatccattttattaatattgaggggttatgttttaaaattgttcatattcttaatcaatcttct 21632764  T
Q  751 tacacacacaagtttactataaagctcctcatttttt 787  Q
    |||||||||||||||||||||||||||||||||||||    
T  21632763 tacacacacaagtttactataaagctcctcatttttt 21632727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 602 - 809
Target Start/End: Complemental strand, 2505143 - 2504933
Alignment:
Q  602 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 701  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  2505143 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 2505045  T
Q  702 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 797  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  2505044 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 2504945  T
Q  798 atatatgttgct 809  Q
    ||||||||||||    
T  2504944 atatatgttgct 2504933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 550 - 809
Target Start/End: Complemental strand, 2500838 - 2500579
Alignment:
Q  550 atacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattc 649  Q
    ||||||||| |||||||||||||||||||||||||||  |||||  ||||||||||||| || ||||||||||||||||  ||| |||||  | |||||     
T  2500838 atacttatgccatgtggctctcttttgttcttgattccctactaatcattccttactattta-tctttcatttcccatccgttgcaaaaatacaccattt 2500740  T
Q  650 acttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatc 749  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| || | ||||||||||||||||||||  |||||||  |||||| ||    
T  2500739 acttcacttcatgcaagttgcacaatgaatgcattataatccattttattaatattgtgcggttacattttaaaattatttgtattcttgatcaatcctc 2500640  T
Q  750 ttacacacacaagtttactataaagctcctca-ttttttctaagctcatatatatgttgct 809  Q
    |||||||||||||||||||||||| || |||| ||||||||||||| | ||||||||||||    
T  2500639 ttacacacacaagtttactataaatctactcatttttttctaagcttacatatatgttgct 2500579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 612 - 809
Target Start/End: Original strand, 46092312 - 46092513
Alignment:
Q  612 atctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgagggg 711  Q
    ||||||||||| |||||  ||  |||||||  ||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  46092312 atctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagggg 46092411  T
Q  712 ttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttg 807  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||||||    
T  46092412 ttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttg 46092511  T
Q  808 ct 809  Q
    ||    
T  46092512 ct 46092513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 612 - 809
Target Start/End: Original strand, 46134837 - 46135038
Alignment:
Q  612 atctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgagggg 711  Q
    ||||||||||| |||||  ||  |||||||  ||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  46134837 atctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagggg 46134936  T
Q  712 ttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttg 807  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||||||    
T  46134937 ttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttg 46135036  T
Q  808 ct 809  Q
    ||    
T  46135037 ct 46135038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 570 - 787
Target Start/End: Original strand, 20036251 - 20036467
Alignment:
Q  570 tcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaa-ctctccattcacttcacttcatggaagtt 668  Q
    |||||||||||| |||||||||||| ||||| |||||||||| |||||||||||||||||  || ||||| | || || | ||||||||||||| |||||    
T  20036251 tcttttgttctt-attctttactagtcattcattactatcta-tctttcatttcccatcagatgtaaaaaacacttcagttacttcacttcatgcaagtt 20036348  T
Q  669 acacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttact 768  Q
     || |||||||| |||||||| ||||||||||||| ||||  ||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  20036349 gcataatgaatgcattataattcattttattaatattgagcagttacattttaaaattaatcatattcttaatcaatcctcttacactcacaagtttact 20036448  T
Q  769 ataaagctcctcatttttt 787  Q
    |||||| ||||||||||||    
T  20036449 ataaagttcctcatttttt 20036467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 748 - 785
Target Start/End: Original strand, 43943567 - 43943604
Alignment:
Q  748 tcttacacacacaagtttactataaagctcctcatttt 785  Q
    |||||||||||||||||||||| |||||||||||||||    
T  43943567 tcttacacacacaagtttactacaaagctcctcatttt 43943604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 456 - 520
Target Start/End: Complemental strand, 2505317 - 2505253
Alignment:
Q  456 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||| ||||| ||||| |||||||||||||||||||| |||||||||   |||||||||| ||||    
T  2505317 atctatatctatatctatatatatacatgtattctaacctacatttttcctatgtgtcacctcac 2505253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 520
Target Start/End: Original strand, 43942118 - 43942174
Alignment:
Q  462 atctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||  |||||||||||||| |||||||||| |||  |||||||||||    
T  43942118 atctctatctctata--tacatgtattctaatctacattttgcttacatgtcacttcac 43942174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 512
Target Start/End: Original strand, 5874249 - 5874303
Alignment:
Q  456 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgt 512  Q
    |||||||||||||||||  |||||||||||||||||| ||||| |||| | ||||||    
T  5874249 atctctatctctatctc--tatatacatgtattctaagctacactttgctcatgtgt 5874303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 473 - 738
Target Start/End: Original strand, 26215155 - 26215420
Alignment:
Q  473 tatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctct 572  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||| ||| ||| | ||||||||||||| | ||||||||||| |||||||||||||    
T  26215155 tatatatacatgtattctaaactacattttacttatgtgttacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctct 26215254  T
Q  573 tttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacac 672  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26215255 tttgttcttgattctttgctagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacac 26215354  T
Q  673 aatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattctt 738  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26215355 aatgaatgtgttataatccattttattaatagcgaggggttacattttaaaattattcatattctt 26215420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 548 - 809
Target Start/End: Original strand, 48266211 - 48266474
Alignment:
Q  548 tcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccat 647  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||| |||||||||| |||||| ||| |||||||||||||    
T  48266211 tcatacttatgtcatgtggctatcttttcttcttgattctttactagtcattccttactatcta-tctttcattttccatcagttgcaaaaactctccat 48266309  T
Q  648 tcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatca 747  Q
    | |||| |||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||     
T  48266310 ttactt-acttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcc 48266408  T
Q  748 tcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgct 809  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  48266409 tcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgct 48266474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 537 - 809
Target Start/End: Original strand, 35870278 - 35870553
Alignment:
Q  537 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 636  Q
    |||||||| | ||||||||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||  |    
T  35870278 taactaatctctcatacttatgccatgtggctatcttttcttcttgattctttactagtcattccttactatcta-tctttcattttccatcagttgcga 35870376  T
Q  637 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 736  Q
    |||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  35870377 aaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagaggttacattttaaaattattcatattc 35870476  T
Q  737 ttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgct 809  Q
    ||| |||||| ||||||||||||||||   ||||||||||| |||||| |||||||||| || ||||||||||||||    
T  35870477 ttaatcaatcctcttacacacacaagtttattactataaaggtcctcatttttttctaaacttatatatatgttgct 35870553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 602 - 809
Target Start/End: Original strand, 52349726 - 52349936
Alignment:
Q  602 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 701  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  52349726 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 52349824  T
Q  702 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 797  Q
    || ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  52349825 tattgaggggttacattttaaaattatttatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 52349924  T
Q  798 atatatgttgct 809  Q
    ||||||||||||    
T  52349925 atatatgttgct 52349936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 721 - 809
Target Start/End: Original strand, 26215432 - 26215520
Alignment:
Q  721 aaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatatatgttgct 809  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26215432 aaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatatatgttgct 26215520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 456 - 514
Target Start/End: Original strand, 346592 - 346648
Alignment:
Q  456 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtca 514  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  346592 atctctatctctatctctata--tacatgtattctaaactacattttgcttatgtgtca 346648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 731 - 785
Target Start/End: Complemental strand, 54945776 - 54945722
Alignment:
Q  731 atattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt 785  Q
    ||||| ||| || ||| |||||||||||||||||||||| |||||||||||||||    
T  54945776 atatttttattctatcctcttacacacacaagtttactacaaagctcctcatttt 54945722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 456 - 503
Target Start/End: Complemental strand, 10179448 - 10179403
Alignment:
Q  456 atctctatctctatctctatatatacatgtattctaaactacattttg 503  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||    
T  10179448 atctctatctctatctctatata--catgtattctaaactacactttg 10179403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 520
Target Start/End: Complemental strand, 3744521 - 3744474
Alignment:
Q  473 tatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  3744521 tatatatacatgtattctaacctacactttgcttatgtgtcacctcac 3744474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 514
Target Start/End: Complemental strand, 33519276 - 33519233
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtca 514  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  33519276 tctatatatacatgtattctaacctacatattgcttatgtgtca 33519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 785
Target Start/End: Complemental strand, 5884422 - 5884368
Alignment:
Q  731 atattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt 785  Q
    ||||| ||| || ||| |||||||||||||||||||||| |||||| ||||||||    
T  5884422 atatttttattctatcctcttacacacacaagtttactacaaagcttctcatttt 5884368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 52349555 - 52349604
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  52349555 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 52349604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 482 - 786
Target Start/End: Original strand, 3127 - 3430
Alignment:
Q  482 atgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttctt 581  Q
    ||||||| |||||||||||||  |||||||||||||||| ||  | | | ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  3127 atgtattttaaactacattttacttatgtgtcacttcaccaacgtctcccttttgtaactaatctctcatacttatgtcatgtggctctcttttgttctt 3226  T
Q  582 gattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgt 681  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||| ||| |||||| || |||| ||||||||||||| ||||| |||||||| ||     
T  3227 gattctttactagccattctttactattta-tctttcatttcccatcagttgcaaaaacacttcatttacttcacttcatgcaagttgcacaatgattga 3325  T
Q  682 attataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca 781  Q
    |||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  3326 attataatccattttattaatattaagcggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttactataaagctcctca 3425  T
Q  782 ttttt 786  Q
    |||||    
T  3426 ttttt 3430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 575
Target Start/End: Original strand, 1404 - 1504
Alignment:
Q  474 atatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctctt 573  Q
    |||||||||||||||||||  | ||||||| | || |||||| |||| ||  || ||||||| |||| ||| ||||||||||||| ||  ||||||||||    
T  1404 atatatacatgtattctaaggtgcattttgatgatttgtcacctcaccaaagttctcttttt-taaccaatctttcatacttatgccaaatggctctctt 1502  T
Q  574 tt 575  Q
    ||    
T  1503 tt 1504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 184; Significance: 4e-99; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 465 - 803
Target Start/End: Complemental strand, 37302266 - 37301929
Alignment:
Q  465 tctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgt 564  Q
    ||||||| |||||||||||||||||||| ||||||||||  |||||||||| | || |||   ||| |||  |||||||| | | ||||||||| |||||    
T  37302266 tctatctatatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgacttcctttc-taactaatctcttatacttatgccatgt 37302168  T
Q  565 ggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatgga 664  Q
    || |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||| |||||| ||||||| ||||||||||||| |    
T  37302167 ggatctcttttgttcttgattctttactagccattccgtacaatcta-tctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgca 37302069  T
Q  665 agttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtt 764  Q
    |||||||||||||||| |||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  37302068 agttacacaatgaatgcattataatccattttattaataatggagggttacattttaaaattattcatattcttaatcaatccacttacacacacaagtt 37301969  T
Q  765 tactataaagctcctcatt-ttttctaagctcatatatat 803  Q
    ||||||||| ||||||||| ||||||||||| ||||||||    
T  37301968 tactataaaactcctcatttttttctaagcttatatatat 37301929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 537 - 809
Target Start/End: Complemental strand, 21605274 - 21605001
Alignment:
Q  537 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 636  Q
    |||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||||| ||||    || ||    
T  21605274 taactaatctctcatacttatgtcatgtggctatcttttgttcttgattctttattagtcattccttactatcta-tctttcattttccattggctgcaa 21605176  T
Q  637 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 736  Q
    |||| || |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  21605175 aaacacttcatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttaaattttaaaattattcatattc 21605076  T
Q  737 ttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgct 809  Q
    ||| |||||| ||||||||||||||||   |||||||||||||||||| |||||||||||||  |||||||||||||    
T  21605075 ttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagct--tatatatgttgct 21605001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 602 - 809
Target Start/End: Original strand, 36991043 - 36991253
Alignment:
Q  602 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 701  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||    
T  36991043 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatctattttattaa 36991141  T
Q  702 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 797  Q
    || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||    
T  36991142 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttat 36991241  T
Q  798 atatatgttgct 809  Q
    ||||||||||||    
T  36991242 atatatgttgct 36991253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 10180436 - 10180485
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  10180436 tctatatatacatgtattctaacctacattttgcttatgtgtcacctcac 10180485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 512
Target Start/End: Original strand, 11381255 - 11381296
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgt 512  Q
    |||||||||||||||||||||| ||||||||||  |||||||    
T  11381255 tctatatatacatgtattctaacctacattttgcctatgtgt 11381296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 572
Target Start/End: Original strand, 11386776 - 11386869
Alignment:
Q  479 tacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctct 572  Q
    |||||||||||||| |||||||||  |||  |||||| |||| || | | ||  |||||||| ||| | ||||||||||| |||||||||||||    
T  11386776 tacatgtattctaagctacattttccttacatgtcacctcaccaaaactctccctttgtaaccaatctctcatacttatgccatgtggctctct 11386869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 2e-88; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 537 - 819
Target Start/End: Complemental strand, 41646912 - 41646629
Alignment:
Q  537 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 636  Q
    |||||||| | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||     ||||||||||| |||||  ||| ||    
T  41646912 taactaatctctcatacttatgccatgtggctatcttttgttcttgattctttactagccattccttactt----atctttcattttccatcggttgcaa 41646817  T
Q  637 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 736  Q
    |||| ||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41646816 aaacactccatttacttcatttcatgcaagttacacaatgaatgtattttaatccattttattaatattgaggggttacattttaaaattattcatattc 41646717  T
Q  737 ttagtcaatcatcttacacacacaagt---ttactataaagctcctca--ttttttctaagctcatatatatgttgctgatgatgtcc 819  Q
    ||| |||||| ||||||||||||||||   ||||||||||||||||||  ||||||||||||| |||||||||||||| ||| |||||    
T  41646716 ttaatcaatcctcttacacacacaagtttattactataaagctcctcattttttttctaagcttatatatatgttgcttatgttgtcc 41646629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 602 - 809
Target Start/End: Complemental strand, 7574233 - 7574023
Alignment:
Q  602 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 701  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  7574233 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 7574135  T
Q  702 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 797  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  7574134 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 7574035  T
Q  798 atatatgttgct 809  Q
    ||||||||||||    
T  7574034 atatatgttgct 7574023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 602 - 809
Target Start/End: Complemental strand, 16668828 - 16668618
Alignment:
Q  602 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 701  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  16668828 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacataatgaatgcattataatccattttattaa 16668730  T
Q  702 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 797  Q
    || ||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  16668729 tattgaggggttacattttaaaattattcatattcttgatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 16668630  T
Q  798 atatatgttgct 809  Q
    ||||||||||||    
T  16668629 atatatgttgct 16668618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 681 - 746
Target Start/End: Original strand, 43564237 - 43564302
Alignment:
Q  681 tattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatc 746  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  43564237 tattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatc 43564302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 681 - 739
Target Start/End: Original strand, 29455447 - 29455505
Alignment:
Q  681 tattataatccattttattaatagtgaggggttacattttaaaattattcatattctta 739  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  29455447 tattataatccattttattaatatcgaggggttacattttaaaattattcatattctta 29455505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 547
Target Start/End: Complemental strand, 6414398 - 6414329
Alignment:
Q  477 tatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttt 547  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||| |||| | ||| |||||||||||    
T  6414398 tatacatgtattctaaactacactttgcttatgtgtcacctcactaat-ttttttctttttaactaatttt 6414329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 22990081 - 22990032
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||| ||||    
T  22990081 tctatatatacatgtattctaacgtacattttgcttatgtgtcacctcac 22990032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 520
Target Start/End: Complemental strand, 37904153 - 37904098
Alignment:
Q  465 tctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    ||||| |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  37904153 tctatatctatatatacatgtattctaagctacatttttcctatgtgtcacctcac 37904098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 7574404 - 7574355
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  7574404 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 7574355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 16668987 - 16668938
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  16668987 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 16668938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 526
Target Start/End: Original strand, 29455077 - 29455130
Alignment:
Q  473 tatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatat 526  Q
    |||||||| ||||||||||| |||||||||   ||||||||||||||| |||||    
T  29455077 tatatatatatgtattctaagctacatttttcctatgtgtcacttcaccaatat 29455130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 526
Target Start/End: Complemental strand, 31618628 - 31618575
Alignment:
Q  473 tatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatat 526  Q
    |||||||| || |||||||| ||||| |||||||||||||||| |||| |||||    
T  31618628 tatatatatatatattctaagctacactttgtttatgtgtcacctcaccaatat 31618575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 2e-79; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 537 - 809
Target Start/End: Complemental strand, 22912735 - 22912463
Alignment:
Q  537 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaa-ttgga 635  Q
    |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||  ||| |    
T  22912735 taactaatctctcatacttatgccatgtggctctcttttgttcttgattctttactagccattccttattattta-tctttcatttcccatcaggttgca 22912637  T
Q  636 aaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatatt 735  Q
     |||| ||||||| |||||||||| || | |||||| |||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||    
T  22912636 gaaacactccatttacttcacttcttgcatgttacaaaatgaatgcattataaaccattttattaata-tgaggagttacattttaaaattattcatatt 22912538  T
Q  736 cttagtcaatcatcttacacacacaagtttactataaagctcctcatt-ttttctaagctcatatatatgttgct 809  Q
    |||| |||||| |||||||||||| | |||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  22912537 cttaatcaatcctcttacacacacgaatttactattaagctcctcatttttttctaagcttatatatatgttgct 22912463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 602 - 809
Target Start/End: Original strand, 13786229 - 13786439
Alignment:
Q  602 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 701  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  13786229 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 13786327  T
Q  702 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 797  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  13786328 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 13786427  T
Q  798 atatatgttgct 809  Q
    ||||||||||||    
T  13786428 atatatgttgct 13786439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 490 - 786
Target Start/End: Complemental strand, 23726278 - 23725986
Alignment:
Q  490 taaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttcttgattcttt 589  Q
    |||| |||||||||||||||||||||||||| |   | | | ||||||||||||| | |||||||||||| || ||||||||||||||||||||||||||    
T  23726278 taaattacattttgtttatgtgtcacttcaccagcgtctcccttttgtaactaatctctcatacttatgttatatggctctcttttgttcttgattcttt 23726179  T
Q  590 actagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataat 689  Q
    ||| | ||||| ||||||||| |||||||||||  ||||  ||| |||||| || |||| |||||| |||||| ||||| ||||||||||| ||||||||    
T  23726178 actggtcattctttactatct-atctttcatttttcatctgttgcaaaaacacttcatttacttcatttcatgcaagttgcacaatgaatgaattataat 23726080  T
Q  690 ccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttt 786  Q
    |||||||||||||| | |  ||||||||||| |||||||||||||||||| |||||| ||||   ||||||||||||||||||||||||||||||||    
T  23726079 ccattttattaatattaaacggttacatttt-aaattattcatattcttaatcaatcctctt--gcacacaagtttactataaagctcctcattttt 23725986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 602 - 806
Target Start/End: Complemental strand, 25807914 - 25807706
Alignment:
Q  602 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 701  Q
    |||||||||| |||||||||| |||||||||  ||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  25807914 ttactatcta-tctttcattttccatcaattacaaaaactttccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 25807816  T
Q  702 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca--ttttttctaagctca 796  Q
    || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||   ||||||||||||||||||  ||||||||||||| |    
T  25807815 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcattttttttctaagctta 25807716  T
Q  797 tatatatgtt 806  Q
    ||||||||||    
T  25807715 tatatatgtt 25807706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 456 - 520
Target Start/End: Original strand, 29679029 - 29679095
Alignment:
Q  456 atctctatctctatctctat--atatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||||| |  ||||||||||||||||||||||| |||| ||||||||||| ||||    
T  29679029 atctctatctctatctctctctatatacatgtattctaaactacactttgcttatgtgtcacctcac 29679095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 473 - 520
Target Start/End: Original strand, 39621645 - 39621692
Alignment:
Q  473 tatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||    
T  39621645 tatatatacatgtattctaaactacactttgcttatgtgtcacctcac 39621692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 13786058 - 13786107
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  13786058 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 13786107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 3e-69; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 602 - 809
Target Start/End: Complemental strand, 13433595 - 13433385
Alignment:
Q  602 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 701  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  13433595 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 13433497  T
Q  702 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 797  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  13433496 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 13433397  T
Q  798 atatatgttgct 809  Q
    ||||||||||||    
T  13433396 atatatgttgct 13433385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 699 - 809
Target Start/End: Complemental strand, 16712155 - 16712046
Alignment:
Q  699 taatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca-ttttttctaagctcat 797  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||| || ||||| ||||||| ||||||||||||||||    
T  16712155 taatagtgaggggttacattttaaaattattcatattcttaatcaatcatcttacacacac--gttcaccataaaactcctcatttttttctaagctcat 16712058  T
Q  798 atatatgttgct 809  Q
    ||||||||||||    
T  16712057 atatatgttgct 16712046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 515
Target Start/End: Original strand, 18877355 - 18877405
Alignment:
Q  465 tctatctctatatatacatgtattctaaactacattttgtttatgtgtcac 515  Q
    ||||||| | |||||||||||||||||| |||||||||| ||| |||||||    
T  18877355 tctatctatctatatacatgtattctaacctacattttgcttaggtgtcac 18877405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 8643634 - 8643585
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||||||||| |||||||||| |||  |||||| ||||    
T  8643634 tctatatatacatgtattctaagctacattttgcttacatgtcacctcac 8643585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 13433766 - 13433717
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  13433766 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 13433717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 512
Target Start/End: Original strand, 18882289 - 18882343
Alignment:
Q  456 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgt 512  Q
    |||||||||||||||||  |||||||||||||||||| ||||| |||| ||| ||||    
T  18882289 atctctatctctatctc--tatatacatgtattctaagctacactttgcttaggtgt 18882343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 520
Target Start/End: Original strand, 7356 - 7411
Alignment:
Q  465 tctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 520  Q
    ||||||| |||||||||||||||| ||| |||||||||| |||  |||||||||||    
T  7356 tctatctatatatatacatgtattttaagctacattttgcttacatgtcacttcac 7411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 785
Target Start/End: Complemental strand, 10170 - 10116
Alignment:
Q  731 atattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt 785  Q
    ||||| ||| || ||| |||||||||||||||||||||| |||||| ||||||||    
T  10170 atatttttattctatcctcttacacacacaagtttactacaaagcttctcatttt 10116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 512
Target Start/End: Complemental strand, 1422 - 1381
Alignment:
Q  471 tctatatatacatgtattctaaactacattttgtttatgtgt 512  Q
    |||||||||||||||||||||| ||||||||||  |||||||    
T  1422 tctatatatacatgtattctaacctacattttgcctatgtgt 1381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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