View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13722_high_5 (Length: 400)
Name: NF13722_high_5
Description: NF13722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13722_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 393
Target Start/End: Original strand, 25381220 - 25381600
Alignment:
| Q |
13 |
agaagcaaggtatatagatttgtgattgagatgttattcccccgctcccttgagaatccattttatacaagggaacaacacttcacgatcatgtatatgt |
112 |
Q |
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| T |
25381220 |
agaagcaaggtatatagatttgtgattgagatgttattcccccgctcccttgagaatccattttatacaagggaacaacacttcacgatcatgtatatgc |
25381319 |
T |
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| Q |
113 |
catatgacgtaacaactttcaagacatatcctagcacagtaaagacaatttttattgccatatttttaccacttcatttatagatttagaatatctttaa |
212 |
Q |
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| T |
25381320 |
catatgacgtaaaaactttcaagacatatcctagcacagtaaagacaatttttattgccatatctttaccacttcatttatagatttagaatatctttaa |
25381419 |
T |
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| Q |
213 |
ctaagtccacataattgtaatatttcttattatctaattgaccttacaaatattcaagactcttgtaatctgaatgtgcaggaagaggttgcaacaactg |
312 |
Q |
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| T |
25381420 |
ctaaatccacataattgtaatatttcttattatctaattgaccttgcaaatattcaagactcttgtaatctgaatgtgcaggaacaggttgcaacaactg |
25381519 |
T |
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| Q |
313 |
agcaggacagtgctgatgttaaagatcaagaggatcccatggcgtatcaaagtccagagcaatttgatgatagtgatgatg |
393 |
Q |
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| T |
25381520 |
agcaggacagtgctgatgttaaagatcaggaggatcccatggcgtatcaaagtccagagcaatttgatgatagtgatgatg |
25381600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 393
Target Start/End: Complemental strand, 38338718 - 38338571
Alignment:
| Q |
247 |
taattgaccttacaaatattcaagactcttgtaatctgaatgtgcaggaagaggttgcaacaactgagcagg---acagtgctgatgttaaagatcaaga |
343 |
Q |
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| T |
38338718 |
taattgaccttgctaattttcaaaactcttgttatctgaatg--caggaaaaggttgcaacagctgagcaggaccacatagaagttgttgaagatcggga |
38338621 |
T |
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| Q |
344 |
ggatcccatggcgtatcaaagtccagagcaatttgatgatagtgatgatg |
393 |
Q |
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| T |
38338620 |
agatcccatggaaaatcaaattccggagcaatctgatgatagtgatgatg |
38338571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 38330295 - 38330246
Alignment:
| Q |
268 |
aagactcttgtaatctgaatgtgcaggaagaggttgcaacaactgagcagga |
319 |
Q |
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| T |
38330295 |
aagactcttgttatctga--gtgcaggaagaggttgcaacagctgagcagga |
38330246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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