View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13722_low_3 (Length: 485)
Name: NF13722_low_3
Description: NF13722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13722_low_3 |
 | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
| [»] scaffold0016 (3 HSPs) |
| | |
|
| [»] scaffold0719 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 466
Target Start/End: Original strand, 5291490 - 5291939
Alignment:
| Q |
17 |
gacaacaccaaagaggacactaatggaaagaataagttgaaatgcacaagtccatgttgtatgaaaccaccatggaaattctcccattctgtatgcatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5291490 |
gacaacaccaaagaggacactaatggaaagaataagttgaaatgcacaagtccatgttgtatgaaaccaccatggaaattctcccattctgtatgcatca |
5291589 |
T |
|
| Q |
117 |
actgcaatgtaattcacaatttcaccggccgagtgtctctgccttgccgagctagaaagctttaactgctttcggtaaaccgccaccataagagctgatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5291590 |
actgcaatgtaattcacaatttcaccggccgagtgtctctgccttgccgagctagaaagctttaactgctttcggtaaaccgccaccataagagctgatc |
5291689 |
T |
|
| Q |
217 |
tcattttcattcctgacctccttgagttaaaaaaccaatgcctttgagataaagactcaaaaactttggtgagaatcaaaataccaactatggaaagacc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5291690 |
tcattttcattcctgacctccttgagttaaaaaaccaatgcctttgagataaagactcaaaaactttggtgagaatcaaaataccaactatggaaagacc |
5291789 |
T |
|
| Q |
317 |
ttgtttgagatctgcctcagttctatttgagtagttaacaaaagcatagagtattagaggtgaaactacaacagaaatagttctgagtaatgcataaaat |
416 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||| | ||||||||||||| |
|
|
| T |
5291790 |
ttgtttgagatctgcctcggttctatttgagtagttaacaaaagcatagagtataagaggtgaaactgcaaccgaaacagttcttattaatgcataaaat |
5291889 |
T |
|
| Q |
417 |
gctattactatgttttcttttaagtaagttctaataacagaccaaagaac |
466 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||||| | |||||||||||| |
|
|
| T |
5291890 |
gctattaatatgttttctttcaagaaagttctaactatagaccaaagaac |
5291939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 5312817 - 5312371
Alignment:
| Q |
18 |
acaacaccaaagaggacactaatggaaagaataagttgaaatgcacaagtccatgttgtatgaaaccaccatggaaattctcccattctgtatgcatcaa |
117 |
Q |
| |
|
||||||||||| || | | |||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5312817 |
acaacaccaaaaagaatagcaatggacagaacaagttgcaatgcacaagtccatgttatatgaaaccaccatggaaattctcccattctatatgcatcaa |
5312718 |
T |
|
| Q |
118 |
ctgcaatgtaattcacaatttcaccggccgagtgtctctgccttgccgagctagaaagctttaactgctttcggtaaaccgccaccataagagctgatct |
217 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||| ||||||| ||| |||||||||| ||||||||| ||||| |||||||| | ||||||||| |
|
|
| T |
5312717 |
ttgcaatgtaattcaaaatttcgccggttgagtgtcttgtccttgccatgcttgaaagctttagctgctttcgataaactgccaccatcaaagctgatct |
5312618 |
T |
|
| Q |
218 |
cattttcattcctgacctccttgagttaaaaaaccaatgcctttgagataaagactcaaaaactttggtgagaatcaaaataccaactatggaaagacct |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| | |||||| | |||||| | | |||||||||||||| || ||||||||| ||||||||| |
|
|
| T |
5312617 |
cattttcattcctgacctccttgag--aaaaaaccaatgtcgttgagacagagactcgaccaatttggtgagaatcagaaaaccaactattgaaagacct |
5312520 |
T |
|
| Q |
318 |
tgtttgagatctgcctcagttctatttgagtagttaacaaaagcatagagtattagaggtgaaactacaacagaaatagttctgagtaatgcataaaatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5312519 |
tgtttgagatctgcctcagttctatttgcgtagttaacaaaagcatagagtattagaggtgaaactacaacagaaatagttctgattaatgcataaaatg |
5312420 |
T |
|
| Q |
418 |
ctattactatgttttcttttaagtaagttctaataacagaccaaagaac |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5312419 |
ctattactatgttttcttttaagtaagttctaataacagaccaaagaac |
5312371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 26 - 466
Target Start/End: Complemental strand, 15124848 - 15124408
Alignment:
| Q |
26 |
aaagaggacactaatggaaagaataagttgaaatgcacaagtccatgttgtatgaaaccaccatggaaattctcccattctgtatgcatcaactgcaatg |
125 |
Q |
| |
|
|||||| ||||| ||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
15124848 |
aaagagaacactggtggaaagaaaaagttgcaatgcagaagtccatgttatatgaaaccaccatggaaattctcccattctataagaatcaactgcaatg |
15124749 |
T |
|
| Q |
126 |
taattcacaatttcaccggccgagtgtctctgccttgccgagctagaaagctttaactgctttcggtaaaccgccaccataagagctgatctcattttca |
225 |
Q |
| |
|
|||||||||||||| ||| |||||||||| | ||||||||||||||||||||||| ||||||| | ||||| || ||||| ||||||||||||||||||| |
|
|
| T |
15124748 |
taattcacaatttctccgaccgagtgtcttttccttgccgagctagaaagctttagctgcttttgataaactgctaccattagagctgatctcattttca |
15124649 |
T |
|
| Q |
226 |
ttcctgacctccttgagttaaaaaaccaatgcctttgagataaagactcaaaaactttggtgagaatcaaaataccaactatggaaagaccttgtttgag |
325 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
15124648 |
tacctgacctccttgagttaaaaaaccaatgtctttgagataccgactcaaagactttagtgacaaccaaaaaaccaactatggaaagaccttgtttgag |
15124549 |
T |
|
| Q |
326 |
atctgcctcagttctatttgagtagttaacaaaagcatagagtattagaggtgaaactacaacagaaatagttctgagtaatgcataaaatgctattact |
425 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| | |
|
|
| T |
15124548 |
atcttcctcagttctatttgagtagttaacaaaagcatagagtattagaggtgaaactacaacagctatagttctgattaatgcataaaatgctattaat |
15124449 |
T |
|
| Q |
426 |
atgttttcttttaagtaagttctaataacagaccaaagaac |
466 |
Q |
| |
|
||||||||||||| ||| | ||||| | |||||||||||| |
|
|
| T |
15124448 |
atgttttcttttaggtatgatctaactatagaccaaagaac |
15124408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 76 - 466
Target Start/End: Original strand, 5284054 - 5284444
Alignment:
| Q |
76 |
tatgaaaccaccatggaaattctcccattctgtatgcatcaactgcaatgtaattcacaatttcaccggccgagtgtctctgccttgccgagctagaaag |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5284054 |
tatgaaaccaccatggaaattctcccattctatatgcatcaactacaatgtaattcacaatttcaccggccgagtgtcttgtccttgccgagctagaaag |
5284153 |
T |
|
| Q |
176 |
ctttaactgctttcggtaaaccgccaccataagagctgatctcattttcattcctgacctccttgagttaaaaaaccaatgcctttgagataaagactca |
275 |
Q |
| |
|
||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||| |
|
|
| T |
5284154 |
ctttagttgcttttgataaattgccaccataagagctgatctcattttcattcctgacctccttgagttaaaaaaccaatgtctttgagacagagaatca |
5284253 |
T |
|
| Q |
276 |
aaaactttggtgagaatcaaaataccaactatggaaagaccttgtttgagatctgcctcagttctatttgagtagttaacaaaagcatagagtattagag |
375 |
Q |
| |
|
| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
5284254 |
actaatttggttagaattaaaataccaactatggaaagaccttgtttgagatctgcctcagttctatttgagtagttaacaaaagcataaagtataagag |
5284353 |
T |
|
| Q |
376 |
gtgaaactacaacagaaatagttctgagtaatgcataaaatgctattactatgttttcttttaagtaagttctaataacagaccaaagaac |
466 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||| | |||||||||||| |
|
|
| T |
5284354 |
gtgaaactacagcagaaatagttctgattaatgcataaaatgctattaatatgttttcttttaagaaagttctaattatagaccaaagaac |
5284444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 5305607 - 5305159
Alignment:
| Q |
18 |
acaacaccaaagaggacactaatggaaagaataagttgaaatgcacaagtccatgttgtatgaaaccaccatggaaattctcccattctgtatgcatcaa |
117 |
Q |
| |
|
||||||||||| |||| | ||||||||||| |||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
5305607 |
acaacaccaaaaaggataacaatggaaagaacaagttgcaatgcacaagtccatgttatatgaaaccaccatgggaattctcccattctatatgcatcaa |
5305508 |
T |
|
| Q |
118 |
ctgcaatgtaattcacaatttcaccggccgagtgtctctgccttgccgagctagaaagctttaactgctttcggtaaaccgccaccataagagctgatct |
217 |
Q |
| |
|
|| ||||||||||||||||||| |||||| ||||||| ||||||| |||||||||||||| ||||||| | ||||| || |||| | ||||||||| |
|
|
| T |
5305507 |
ctacaatgtaattcacaatttcgccggccaagtgtcttgttcttgccgggctagaaagctttagctgcttttgataaactgctgccatcaaagctgatct |
5305408 |
T |
|
| Q |
218 |
cattttcattcctgacctccttgagttaaaaaaccaatgcctttgagataaagactcaaaaactttggtgagaatcaaaataccaactatggaaagacct |
317 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| ||||||||| ||||||||| || || |||||||| ||||||| |
|
|
| T |
5305407 |
cattttcattcctgacctccttgagttgaaaaaccaatgtctctgagacaaagactccaaaactttgttgagaatcagaaaacaaactatggtaagacct |
5305308 |
T |
|
| Q |
318 |
tgtttgagatctgcctcagttctatttgagtagttaacaaaagcatagagtattagaggtgaaactacaacagaaatagttctgagtaatgcataaaatg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| |||||||||||||| |
|
|
| T |
5305307 |
tgtttgagatctgcctcagttctatttgagtagttaacaaaagcatagagtataagaggtgaaatggcaaccgaaatagttctgattaatgcataaaatg |
5305208 |
T |
|
| Q |
418 |
ctattactatgttttcttttaagtaagttctaataacagaccaaagaac |
466 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| | | |||||||||||| |
|
|
| T |
5305207 |
ctattaatatgttttcttttaagaaagttcttactatagaccaaagaac |
5305159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 466
Target Start/End: Original strand, 14950822 - 14951259
Alignment:
| Q |
30 |
aggacactaatggaaagaataagttgaaatgcacaagtccatgttgtatgaaaccaccatggaaattctcccattctgtatgcatcaactgcaatgtaat |
129 |
Q |
| |
|
||||||| ||| ||||||| |||||| ||| || ||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
14950822 |
aggacaccaatagaaagaacaagttgcaatacagaagtccatgccatatgaaaccaccatggaaattctcccattctataagcatcaactgcaatgtaat |
14950921 |
T |
|
| Q |
130 |
tcacaatttcaccggccgagtgtctctgccttgccgagctagaaagctttaactgctttcggtaaaccgccaccataagagctgatctcattttcattcc |
229 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||||||| |||||||||| ||||||| | ||||| || ||||| |||||||||||||||||||| || |
|
|
| T |
14950922 |
tcacaatttctccggccgagtgcctcatccttgccgagcttgaaagctttagctgcttttgataaactgctaccattagagctgatctcattttcatacc |
14951021 |
T |
|
| Q |
230 |
tgacctcctt-gagttaaaaaaccaatgcctttgagataaagactcaaaaactttggtgagaatcaaaataccaactatggaaagaccttgtttgagatc |
328 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||| | ||||||||| ||||| |||| || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14951022 |
tgacctcttttgagttaaaaaaccaatgtctttgagacagagactcaaagactttagtgacaaccaaaaaaccaactatggaaagaccttgtttgagatc |
14951121 |
T |
|
| Q |
329 |
tgcctcagttctatttgagtagttaacaaaagcatagagtattagaggtgaaactacaacagaaatagttctgagtaatgcataaaatgctattactatg |
428 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |
|
|
| T |
14951122 |
ttcctcagttctatttgagtagttaacaaaagcatagagtatcagaggtgaaactacaacagctatagttctgattaatgcataaaatgctattaatatg |
14951221 |
T |
|
| Q |
429 |
ttttcttttaagtaagttctaataacagaccaaagaac |
466 |
Q |
| |
|
|||||||||| ||||| ||||| | |||||||||||| |
|
|
| T |
14951222 |
ttttcttttaggtaagatctaactatagaccaaagaac |
14951259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 5352867 - 5352913
Alignment:
| Q |
96 |
tctcccattctgtatgcatcaactgcaatgtaattcacaatttcacc |
142 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||| |||||||| |
|
|
| T |
5352867 |
tctcccattctgtatgcatcaacagctatgaaattcacgatttcacc |
5352913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 31527493 - 31527941
Alignment:
| Q |
18 |
acaacaccaaagaggacactaatggaaagaataagttgaaatgcacaagtccatgttgtatgaaaccaccatggaaattctcccattctgtatgcatcaa |
117 |
Q |
| |
|
|||||||| || |||||| |||||| |||| |||||| | | ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31527493 |
acaacaccgaaaaggacagcaatggacagaacaagttgtagtatacaagtccatgttatatgaaaccaccatggaaattctcccattctatatgcatcaa |
31527592 |
T |
|
| Q |
118 |
ctgcaatgtaattcacaatttcaccggccgagtgtctctgccttgccgagctagaaagctttaactgctttcggtaaaccgccaccataagagctgatct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||| |||||| ||||| |||||||| ||||||||||| |
|
|
| T |
31527593 |
ctgcaatgtaattcacaatttcaccggccgagtgtcttatctttcccgagctagaaagctttagctgcttctcataaactgccaccatcagagctgatct |
31527692 |
T |
|
| Q |
218 |
cattttcattcctgacctccttgagttaaaaaaccaatgcctttgagataaagactcaaaaactttggtgagaatcaaaataccaactatggaaagacct |
317 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| || || || |||||||| | | |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
31527693 |
cattttcattcctaacctccttgagttaaaaaaccaatgtctctgggaaaaagactcgactaatttggtgagaatcagaaaaccaactatggaaagacct |
31527792 |
T |
|
| Q |
318 |
tgtttgagatctgcctcagttctatttgagtagttaacaaaagcatagagtattagaggtgaaactacaacagaaatagttctgagtaatgcataaaatg |
417 |
Q |
| |
|
| | |||||| | |||| |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
31527793 |
tctctgagatttccctcggttctacttgagtagttaacaaaagcatagagaattagaggtaaaactacaacagaaatagttctgagtagtgcatagaatg |
31527892 |
T |
|
| Q |
418 |
ctattactatgttttcttttaagtaagttctaataacagaccaaagaac |
466 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||| | |||||||||||| |
|
|
| T |
31527893 |
ctattaatatgttttcttgtaagtaagttttaactatagaccaaagaac |
31527941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 343 - 423
Target Start/End: Original strand, 21177706 - 21177786
Alignment:
| Q |
343 |
ttgagtagttaacaaaagcatagagtattagaggtgaaactacaacagaaatagttctgagtaatgcataaaatgctatta |
423 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
21177706 |
ttgagtagttaacaatagcatagagtattagaggtgaaactaaaacagatatagttctgattaatgcataaaatgccatta |
21177786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 21263930 - 21264026
Alignment:
| Q |
335 |
agttctatttgagt-agttaacaaaagcatagagtattagaggtgaaactacaacagaaatagttctgagtaatgcataaaatgctattactatgtt |
430 |
Q |
| |
|
|||||||||||||| ||| ||||| || ||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
21263930 |
agttctatttgagttagtcaacaatagaatagaagattagaggtgaaactacaatagaaatagttctgattaattcataaaatgctattaatatgtt |
21264026 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 21297785 - 21297880
Alignment:
| Q |
335 |
agttctatttgagtagttaacaaaagcatagagtattagaggtgaaactacaacagaaatagttctgagtaatgcataaaatgctattactatgtt |
430 |
Q |
| |
|
||||||||||||||| ||||||| || || | ||||||| |||||||||||||||| |||||||||| | ||||||||| |||||||| |||||| |
|
|
| T |
21297785 |
agttctatttgagtaattaacaatagagtataatattagatgtgaaactacaacagagatagttctgatttatgcataaactgctattaatatgtt |
21297880 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 362 - 466
Target Start/End: Original strand, 21260087 - 21260195
Alignment:
| Q |
362 |
atagagtattagaggtgaaactacaacagaaatagttctgagtaatgcataaaatgctattactatgttttc----ttttaagtaagttctaataacaga |
457 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||| |||||||||||||| || ||| | ||||||| |||| |||||||||||| | ||| |
|
|
| T |
21260087 |
atagagtattagaggtcaaactacaacaacaatagttctgtgtaatgcataaaatacttttaatgtgttttcttaatttttagtaagttctaactataga |
21260186 |
T |
|
| Q |
458 |
ccaaagaac |
466 |
Q |
| |
|
||||||||| |
|
|
| T |
21260187 |
ccaaagaac |
21260195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 21109146 - 21109210
Alignment:
| Q |
366 |
agtattagaggtgaaactacaacagaaatagttctgagtaatgcataaaatgctattactatgtt |
430 |
Q |
| |
|
|||| ||||||||||| |||| ||||| || || ||| |||||||||||||||||||| |||||| |
|
|
| T |
21109146 |
agtaatagaggtgaaattacagcagaagtaattatgattaatgcataaaatgctattaatatgtt |
21109210 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 19913 - 19962
Alignment:
| Q |
335 |
agttctatttgagtagttaacaaaagcatagagtattagaggtgaaacta |
384 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||||||||||||||||||| |
|
|
| T |
19913 |
agttctatttgattagttaacaatagtatagagtattagaggtgaaacta |
19962 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 39824 - 39775
Alignment:
| Q |
335 |
agttctatttgagtagttaacaaaagcatagagtattagaggtgaaacta |
384 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39824 |
agttctatttgattagttaacaatagtatagagtattagaggtgaaacta |
39775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 466
Target Start/End: Complemental strand, 61327 - 61277
Alignment:
| Q |
416 |
tgctattactatgttttcttttaagtaagttctaataacagaccaaagaac |
466 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
61327 |
tgctattattatgttttcttttaagttagttctaactacaaaccaaagaac |
61277 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 48774 - 48737
Alignment:
| Q |
335 |
agttctatttgagtagttaacaaaagcatagagtatta |
372 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
48774 |
agttctatttgagtagttgacaatagcatagagtatta |
48737 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0719
Description:
Target: scaffold0719; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 5840 - 5889
Alignment:
| Q |
335 |
agttctatttgagtagttaacaaaagcatagagtattagaggtgaaacta |
384 |
Q |
| |
|
|||||||||||| |||||||||| || |||||||||||||||||||||| |
|
|
| T |
5840 |
agttctatttgattagttaacaatagtttagagtattagaggtgaaacta |
5889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 466
Target Start/End: Original strand, 5899 - 5949
Alignment:
| Q |
416 |
tgctattactatgttttcttttaagtaagttctaataacagaccaaagaac |
466 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
5899 |
tgctattattatgttttcttttaagttagttctaactagagaccaaagaac |
5949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 11831689 - 11831754
Alignment:
| Q |
335 |
agttctatttgagtagttaacaaaagca--tagagtattagaggtgaaactacaacagaaatagtt |
398 |
Q |
| |
|
|||||||| | | |||||||||| |||| || |||||||||||||||||||||| |||||||||| |
|
|
| T |
11831689 |
agttctatgtaattagttaacaatagcacatatagtattagaggtgaaactacaatagaaatagtt |
11831754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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