View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13722_low_5 (Length: 446)
Name: NF13722_low_5
Description: NF13722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13722_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 45635148 - 45634715
Alignment:
| Q |
18 |
gttttgtgcttctttttagcaatcataatggcactgccaacccttgcaaccttctacactgtgggagattctttgggctggcaaatcggtgttgaatata |
117 |
Q |
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| T |
45635148 |
gttttgtgcttctttttagcaatcaacatggcactgccaacccttgcaaccttctacactgtgggagattctttgggctggcaaatcggtgttgaatata |
45635049 |
T |
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| Q |
118 |
gcacatggacgagtgacaaaacctttgtagtcggtgatagccttggtaagtgggaactagaatcctttctat----ttcatttcaaacacaactcaatgc |
213 |
Q |
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| T |
45635048 |
gcaaatggacgagtgaaaaaacctttgtagtcggtgatagccttggtaagtgggaactagaatcctttctatatatttcatttcaaacacaactcaatgc |
45634949 |
T |
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| Q |
214 |
ttgctttttctc--cataatgagatgagaacaaagatataaaatttcat-aatttcttacattaatattattaatatgacagtgtttctctatggggcta |
310 |
Q |
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| T |
45634948 |
ttgctttttctctccataatgagatgagaacaaagatataaaatt--atcaatttcttacattaatattattaatatgacagtgtttctctatggggcta |
45634851 |
T |
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| Q |
311 |
tacacactgtggatgaagttgcagcaagtgattacatctcctgcaccactggaaatccaattagttcagacaatagtggtgagacaaccatagctcttaa |
410 |
Q |
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| T |
45634850 |
tacacactgtggatgaagttgcagcaagtgactacatctcctgcaccactggaaatccaattagttcagacaatagtggtgagacaaccatagctcttaa |
45634751 |
T |
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| Q |
411 |
gactgcaggaactcattatttcatatctgctacttt |
446 |
Q |
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| T |
45634750 |
gactgcaggaactcattatttcatatctgctacttt |
45634715 |
T |
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