View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13722_low_6 (Length: 428)
Name: NF13722_low_6
Description: NF13722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13722_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 41604445 - 41604818
Alignment:
| Q |
1 |
tattattattgttgtcattttctttggcctcctcttccataattcctaaactttctaggatggcttccattattgtcaagaacaaatgtttggtattttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41604445 |
tattattattgttgtcattttctttggcctcctcttccataattcctaaactttctaggatggcttccattattgtcaagaacaaatgtttggttttttc |
41604544 |
T |
|
| Q |
101 |
tgcatagctggccaccacttccctgtttaaaataatagtaacaaagttaaaaagatgcactcacatcataagtttgtaattagtgaaaatctaaaagagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41604545 |
tgcatagctggccaccacttccctgtttaaaataatagtaacaaagttaaaaagatgcactcacatgataagtttgtaattagtgaaaatctaaaagagt |
41604644 |
T |
|
| Q |
201 |
gcatagataaattagtctttaaaattgtagacatcaattaaa---aattttggcattctttatgaattggcaaatacatcattaaaattgtaaagaatta |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41604645 |
gcatagataaattagtctttaaaattgtagacatcaattaaaagtaattttggcattctttatgaattgacaaatacatcattaaaattgtaaagaatta |
41604744 |
T |
|
| Q |
298 |
ggtagcgactataacgtgacacttgcctnnnnnnnngactatggcgtgacacattaattgaatatataatttttt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41604745 |
ggtagcgactataacgtgacacttgcct-aaaaaaagactatggcgtgacacattaattgaatatataatttttt |
41604818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University