View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13722_low_8 (Length: 398)
Name: NF13722_low_8
Description: NF13722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13722_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 380
Target Start/End: Original strand, 44715137 - 44715509
Alignment:
| Q |
5 |
atactataatcattctctaataatacaacatatacaatgtttttagttgaaataatataattacgaatgtagggtctcgtgcataccatgctatcctatg |
104 |
Q |
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| T |
44715137 |
atactataatcattctctaataatacaacatatacaatgtttttagttgaaataatataattacgaatgtagggtctcgtgcataccatgctatcctatg |
44715236 |
T |
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| Q |
105 |
cacgagtaactgtggacttatgaacattatttatatatnnnnnnngtagttaatataatttatatatagcaaataaaccaatgattannnnnnnnnnnnn |
204 |
Q |
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| T |
44715237 |
caggagtaaccgtggacttatgaacattatttataaa---aaaaagtagttaatataatttatatatagcaaataaaccaatgattatttttattttttt |
44715333 |
T |
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| Q |
205 |
gattacaaaccaatgattatgtttgttgataataatcattggaaagaccaatgattatgataaaatcaaccttaaatctcaataacgtttacaacattga |
304 |
Q |
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| T |
44715334 |
gattacaaaccaatgattatgtttgttgataataatcattgaaaagaccaatgattatgataaaatcaaccttaaatctcaataacgttaacaacattga |
44715433 |
T |
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| Q |
305 |
attcgatgcgcaaagtgggactcagtagagaacaaggaaatagaaaagtggaaagatggaaagctatatagtaggt |
380 |
Q |
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| T |
44715434 |
attcgatttgctaagtgggactcagtataggacaaagaaatggaaaaatggaaagatggaaagctatatagtaggt |
44715509 |
T |
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