View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13722_low_9 (Length: 350)

Name: NF13722_low_9
Description: NF13722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13722_low_9
NF13722_low_9
[»] chr1 (1 HSPs)
chr1 (30-332)||(36314145-36314447)
[»] chr8 (15 HSPs)
chr8 (134-303)||(19337827-19337996)
chr8 (132-305)||(19503674-19503847)
chr8 (134-305)||(19355851-19356022)
chr8 (183-305)||(19390951-19391073)
chr8 (148-305)||(19376956-19377113)
chr8 (180-305)||(19405084-19405209)
chr8 (148-305)||(19345496-19345653)
chr8 (185-305)||(19540124-19540244)
chr8 (185-305)||(19592454-19592574)
chr8 (183-305)||(19411107-19411229)
chr8 (183-305)||(19555171-19555293)
chr8 (198-305)||(19469213-19469320)
chr8 (180-305)||(19172474-19172599)
chr8 (132-259)||(19450666-19450793)
chr8 (132-259)||(19530283-19530410)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 30 - 332
Target Start/End: Original strand, 36314145 - 36314447
Alignment:
Q  30 ttgtatctaatagtatgaaggaaggctatgtctacggtgaaataagcagtaaataatcactttgaacctatctaattaaaatgatattataacttacgta 129  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314145 ttgtatctaatggtatgaaggaaggctatgtctacggtgaaataagcagtaaataatcactttgaacctatctaattaaaatgatattataacttacgta 36314244  T
Q  130 gagctgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314245 gagctgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaa 36314344  T
Q  230 attatcatataattctacgaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccataaattacattccattcatatgatgat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314345 attatcatataattctacgaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccataaattacattccattcatatgatgat 36314444  T
Q  330 gca 332  Q
    |||    
T  36314445 gca 36314447  T

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Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 134 - 303
Target Start/End: Complemental strand, 19337996 - 19337827
Alignment:
Q  134 tgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaatta 233  Q
    ||||||||||||| |||||||| ||| |||||||  ||   |||| |||||||| |||||||||||||||||||||||| ||| ||||||||| ||||||    
T  19337996 tgattttgttggctttaccaaggcgtaaaagttattctttttgtccaaatcaacgtcttgtgtcgaattccatgaatagtatatacatccagtaaaatta 19337897  T
Q  234 tcatataattctacgaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccat 303  Q
       ||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||  ||||||||    
T  19337896 ctgtataattcttcgaatccatagcaattacaatttctccaacatctcatcttgcaatcatcgtaaccat 19337827  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 132 - 305
Target Start/End: Original strand, 19503674 - 19503847
Alignment:
Q  132 gctgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaat 231  Q
    ||||||||||| |   ||||||||||||  ||||||  ||||||  | ||||||||||||||||||||||||||||||||||||| ||||||||||  ||    
T  19503674 gctgattttgtagagtttaccaagacgtagaagttattctgactcaccaaatcaacatcttgtgtcgaattccatgaatagaatatacatccagtcccat 19503773  T
Q  232 tatcatataattctacgaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccataa 305  Q
    || |||| |||||   ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||    
T  19503774 taccataaaattcctggaatccattgcaattacaatttctccaacatctaatcttgcaatcactgtaactataa 19503847  T

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Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 134 - 305
Target Start/End: Complemental strand, 19356022 - 19355851
Alignment:
Q  134 tgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaatta 233  Q
    ||||||||||||| |||||||| ||| |||||||  ||   |||| |||||||| |||||||| ||||||||||||||| ||| ||||||||| ||||||    
T  19356022 tgattttgttggctttaccaaggcgtaaaagttattctttttgtccaaatcaacgtcttgtgttgaattccatgaatagtatatacatccagtaaaatta 19355923  T
Q  234 tcatataattctacgaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccataa 305  Q
       |||||||||  |||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||    
T  19355922 atgtataattcttggaatccatagcaattacaatttctccaacatctcatcttgcaatcactataaccataa 19355851  T

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Target: chr8; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 183 - 305
Target Start/End: Complemental strand, 19391073 - 19390951
Alignment:
Q  183 tcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatctca 282  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||  ||||||||| ||||||  |||||||||||||||||||||| ||||||||||||    
T  19391073 tcaacatattgcgtcgaattccatgaatagaatatacatccagtcccattatcatacaattcttggaatccattgcaactacaatttttccaacatctca 19390974  T
Q  283 tcttgcaatcactgtaaccataa 305  Q
    |||||||||||||||||| ||||    
T  19390973 tcttgcaatcactgtaactataa 19390951  T

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Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 148 - 305
Target Start/End: Complemental strand, 19377113 - 19376956
Alignment:
Q  148 ttaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctac 247  Q
    |||||||| ||| ||||||| |||||||  | ||||||| ||||||||||||||||||||||||||||| ||||||||||  |||   ||| ||||||      
T  19377113 ttaccaaggcgtaaaagttatcctgactcaccaaatcaagatcttgtgtcgaattccatgaatagaatatacatccagtcccattgcgataaaattcttg 19377014  T
Q  248 gaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccataa 305  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  19377013 gaatccattgcaattacaatttctccaacatcttatcttgcaatcactgtaaacataa 19376956  T

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Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 19405209 - 19405084
Alignment:
Q  180 aaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatc 279  Q
    ||||| || |||||||||||||||||||||||| ||| ||||||||| ||||||   |||| |||| ||||||||| |||| ||||||||||||||||||    
T  19405209 aaatccacgtcttgtgtcgaattccatgaatagtatatacatccagtaaaattactgtatagttcttcgaatccatagcaattacaatttctccaacatc 19405110  T
Q  280 tcatcttgcaatcactgtaaccataa 305  Q
    ||||||||||||||||||||||||||    
T  19405109 tcatcttgcaatcactgtaaccataa 19405084  T

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Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 305
Target Start/End: Complemental strand, 19345653 - 19345496
Alignment:
Q  148 ttaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctac 247  Q
    ||||||||||||  ||||||  ||||||  | |||||||||| |||||| ||||||||||||||||||  ||||||||||  |||| |||| |||||       
T  19345653 ttaccaagacgtagaagttattctgactcaccaaatcaacatattgtgttgaattccatgaatagaatgtacatccagtcccattaccataaaattcctg 19345554  T
Q  248 gaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccataa 305  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||||||||| ||||    
T  19345553 gaatccattgcaataacaatttctccaacatctaatcttgcaatcactgtaactataa 19345496  T

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Target: chr8; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 19540124 - 19540244
Alignment:
Q  185 aacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatctcatc 284  Q
    ||||| |||||||||||||||||||| ||||||||||||||||  |||||||||  |||||  |||| || ||||| |||||||| ||||||||||||||    
T  19540124 aacatattgtgtcgaattccatgaatggaatacacatccagtcccattatcataatattcttggaatgcactgcaattacaatttttccaacatctcatc 19540223  T
Q  285 ttgcaatcactgtaaccataa 305  Q
    |||||||||||||||| ||||    
T  19540224 ttgcaatcactgtaactataa 19540244  T

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Target: chr8; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 19592574 - 19592454
Alignment:
Q  185 aacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatctcatc 284  Q
    ||||| |||||||||||||||||||| ||||||||||||||||  |||||||||  |||||  |||| || ||||| ||||||||||||||||||| |||    
T  19592574 aacatattgtgtcgaattccatgaatggaatacacatccagtcccattatcataatattcttggaatgcactgcaattacaatttctccaacatctaatc 19592475  T
Q  285 ttgcaatcactgtaaccataa 305  Q
    |||||||||||||||| ||||    
T  19592474 ttgcaatcactgtaactataa 19592454  T

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Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 305
Target Start/End: Complemental strand, 19411229 - 19411107
Alignment:
Q  183 tcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatctca 282  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||| ||||  |||  ||  |  |||||||||||||||||||||| |||||||||| |    
T  19411229 tcaacatattgtgtcgaattccatgaaaggaatacacatccagtcatattactataatatagttggaatccattgcaactacaatttttccaacatctga 19411130  T
Q  283 tcttgcaatcactgtaaccataa 305  Q
    |||||||||||||||||| ||||    
T  19411129 tcttgcaatcactgtaactataa 19411107  T

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Target: chr8; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 305
Target Start/End: Original strand, 19555171 - 19555293
Alignment:
Q  183 tcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatctca 282  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||| ||||  |||  ||  |  |||||||||||||||||||||| |||||||| |||    
T  19555171 tcaacatattgtgtcgaattccatgaaaggaatacacatccagtcatattactataatatagttggaatccattgcaactacaatttttccaacatttca 19555270  T
Q  283 tcttgcaatcactgtaaccataa 305  Q
    |||||||||||||||||| ||||    
T  19555271 tcttgcaatcactgtaactataa 19555293  T

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Target: chr8; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 19469213 - 19469320
Alignment:
Q  198 gaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatctcatcttgcaatcactgt 297  Q
    ||||||||||||| ||||||||||||||||  |||||||||  |||||  |||| || ||||| |||||||| |||||||||||||||||||||||||||    
T  19469213 gaattccatgaatggaatacacatccagtcccattatcataatattcttggaatgcactgcaattacaatttttccaacatctcatcttgcaatcactgt 19469312  T
Q  298 aaccataa 305  Q
    ||| ||||    
T  19469313 aactataa 19469320  T

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Target: chr8; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 19172474 - 19172599
Alignment:
Q  180 aaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatc 279  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||||||  ||||  ||| ||||||  ||| ||||||||   ||| ||||||||||| |    
T  19172474 aaatcaacatcttgtgtcgaattcgatgaataaaatatacatccagtcccattacgataaaattcttggaacccattgcattcacagtttctccaacaac 19172573  T
Q  280 tcatcttgcaatcactgtaaccataa 305  Q
    | ||||| ||||||||||||||||||    
T  19172574 tgatcttacaatcactgtaaccataa 19172599  T

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Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 19450793 - 19450666
Alignment:
Q  132 gctgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaat 231  Q
    |||| |||||||||| |||||||| ||| ||| |||   ||| | || ||||| || |||| ||||||||||||||||||||||| ||||||||||  ||    
T  19450793 gctgtttttgttggctttaccaaggcgtaaaaattatattgattctccaaatccacttcttttgtcgaattccatgaatagaatatacatccagtcccat 19450694  T
Q  232 tatcatataattctacgaatccattgca 259  Q
    ||  | ||||||||  ||||||||||||    
T  19450693 tactaaataattcttggaatccattgca 19450666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 19530283 - 19530410
Alignment:
Q  132 gctgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaat 231  Q
    |||| |||||||||| |||||||| ||| ||| |||   ||| | || ||||| || |||| ||||||||||||||||||||||| ||||||||||  ||    
T  19530283 gctgtttttgttggctttaccaaggcgtaaaaattatattgattctccaaatccacttcttttgtcgaattccatgaatagaatatacatccagtcccat 19530382  T
Q  232 tatcatataattctacgaatccattgca 259  Q
    ||  | ||||||||  ||||||||||||    
T  19530383 tactaaataattcttggaatccattgca 19530410  T

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