View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13723_low_1 (Length: 789)

Name: NF13723_low_1
Description: NF13723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13723_low_1
NF13723_low_1
[»] chr4 (9 HSPs)
chr4 (215-773)||(34412455-34413020)
chr4 (222-370)||(52457465-52457613)
chr4 (215-381)||(35106052-35106218)
chr4 (394-463)||(52457666-52457736)
chr4 (394-481)||(35105927-35106018)
chr4 (222-300)||(50135758-50135836)
chr4 (222-307)||(40547584-40547669)
chr4 (247-307)||(31787237-31787297)
chr4 (215-301)||(51075037-51075123)
[»] chr3 (7 HSPs)
chr3 (18-139)||(24928990-24929111)
chr3 (718-768)||(7029078-7029128)
chr3 (263-331)||(24695850-24695919)
chr3 (247-331)||(45059198-45059283)
chr3 (220-299)||(37324875-37324954)
chr3 (222-275)||(41044847-41044900)
chr3 (222-302)||(18370958-18371038)
[»] chr7 (8 HSPs)
chr7 (215-370)||(22643949-22644104)
chr7 (215-373)||(3632808-3632966)
chr7 (221-353)||(33614177-33614309)
chr7 (222-307)||(18534284-18534369)
chr7 (237-345)||(40236623-40236730)
chr7 (394-444)||(3632712-3632762)
chr7 (394-444)||(33614374-33614424)
chr7 (691-757)||(33614689-33614755)
[»] scaffold0287 (2 HSPs)
scaffold0287 (215-373)||(13119-13277)
scaffold0287 (394-444)||(13323-13373)
[»] chr1 (3 HSPs)
chr1 (223-391)||(38674270-38674442)
chr1 (681-773)||(38674895-38674986)
chr1 (223-295)||(32454520-32454592)
[»] chr8 (8 HSPs)
chr8 (222-307)||(15358610-15358695)
chr8 (222-307)||(19439063-19439148)
chr8 (222-307)||(19575212-19575297)
chr8 (260-331)||(22914393-22914465)
chr8 (247-331)||(10405773-10405857)
chr8 (222-307)||(3955310-3955395)
chr8 (224-302)||(9636168-9636246)
chr8 (221-295)||(25980721-25980795)
[»] chr6 (1 HSPs)
chr6 (222-307)||(17772826-17772911)


Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 215 - 773
Target Start/End: Complemental strand, 34413020 - 34412455
Alignment:
Q  215 ttgatatattgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaataaacct 314  Q
    ||||| ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||| ||| ||||||||||||||    
T  34413020 ttgatgtattgtttggtagtagagagatataaaagaaatagagatgaaagaattgttgattatttttaaaagtacgaaaataccc-taattaataaacct 34412922  T
Q  315 ccaatcaaaattaatttgttaaataacttaatccaatttctattctaaattgttgacgatgatgatgaatttttt---------gaagattatttaatta 405  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  34412921 tcaatcaaaattaatttgttaaataacttaatccaatttctattctaaattgttgacgatgatgatgaattttttacaaaagatgaagattatttaatta 34412822  T
Q  406 atttgtaatttcatccaaataaattagaactcattttttattcttattgaaactcatcttattaataagaacaagacgagaaaaaagtgaagatataagt 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34412821 atttgtaatttcatccaaataaattagaactcattttttattcttattgaaactcatcttattaataagaacaagacgagaaaaaagtgaaggtataagt 34412722  T
Q  506 atgaataaacatttaaaaagagccttaatcatctttcacccatgctcctcctccatatatggcattcaccatttcatgtgtgcgagagacttcttccaat 605  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  34412721 atgaataaacatttaaaaa-agccttaattatctttcacccatgctcctcctccatatatggcattcaccatttcacgtgtgccagagacttcttccaat 34412623  T
Q  606 ctcaacaccactgccttcaaggtcatttactcctatttttctattttgcttaaaaaattgttcgtctaccactaacaaatgataccttcaacttgtcttc 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34412622 ctcaacaccactgccttcaaggtcatttactcctatttttctattttgcttaaaaaattgttcgtctaccactaacaaatgataccttcaacttgtcttc 34412523  T
Q  706 cataactttcctttgttttatccttcatattccataatcattgttgcaatttgcaggaaagataataa 773  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34412522 tataactttcctttgttttatccttcatattccataatcattgttgcaatttgcaggaaagataataa 34412455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 222 - 370
Target Start/End: Original strand, 52457465 - 52457613
Alignment:
Q  222 attgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaataaacctccaatca 321  Q
    |||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||    
T  52457465 attgtttggtagaagagaaatataaaagaaatagagaagaaagaagtgttgattattttcagaagtaccaaaatacccctaattaataaaccttcaatca 52457564  T
Q  322 aaattaatttgttaaataacttaatccaatttctattctaaattgttga 370  Q
    |||||||||| ||||||||||||||||||||| || || ||||||||||    
T  52457565 aaattaatttattaaataacttaatccaatttttaatcaaaattgttga 52457613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 215 - 381
Target Start/End: Complemental strand, 35106218 - 35106052
Alignment:
Q  215 ttgatatattgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaataaacct 314  Q
    ||||| || |||||| ||||| ||||||||| ||||||||||||| |||||| ||||||||| ||||| |||||||||||| ||| |||| |  ||||||    
T  35106218 ttgatgtagtgtttgatagaagagagatatagaagaaatagagaaaaaagaagtgttgattatttttaaaagtaccaaaatacccttaataataaaacct 35106119  T
Q  315 ccaatcaaaattaatttgttaaataacttaatccaatttctattctaaattgttgacgatgatgatg 381  Q
     | |||||| ||||||| ||||||||||||||||||||| || |||||||||||||| |||||||||    
T  35106118 tcgatcaaagttaatttattaaataacttaatccaatttttaatctaaattgttgacaatgatgatg 35106052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 394 - 463
Target Start/End: Original strand, 52457666 - 52457736
Alignment:
Q  394 attatttaattaatttgtaatttcatccaaataaattagaactc-attttttattcttattgaaactcatc 463  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  52457666 attatttcattaatttgtaacttcatccaaataaattagaactcaattttttattcttattgaaaatcatc 52457736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 394 - 481
Target Start/End: Complemental strand, 35106018 - 35105927
Alignment:
Q  394 attatttaattaatttgtaatttcatccaaataaattagaactcatttttt----attcttattgaaactcatcttattaataagaacaaga 481  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||    |||||||||  ||||||| |  |||||||||||||||    
T  35106018 attatttcattaatttgtaatttcatccaaataaattagaattcatttttttttaattcttattagaactcatgtgtttaataagaacaaga 35105927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 222 - 300
Target Start/End: Complemental strand, 50135836 - 50135758
Alignment:
Q  222 attgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccc 300  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| |||||||||  |||  |||||| ||||||||||    
T  50135836 attgtttggtagaaaagaaagatagaagaaatagagaagaaagaagtgttgattacctttgaaagtactaaaatgcccc 50135758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 40547669 - 40547584
Alignment:
Q  222 attgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaa 307  Q
    |||||||| ||||| ||| ||||| |||||||||||||||||||| ||||||||| ||||  |||||| |||||| ||| ||||||    
T  40547669 attgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgattacttttgaaagtactaaaatgtcccaaattaa 40547584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 31787237 - 31787297
Alignment:
Q  247 aagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaa 307  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| |||||| ||| ||||||    
T  31787237 aagaaatagagaagaaagaaatgttgattacttttaaaagtactaaaatgtcccaaattaa 31787297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 51075123 - 51075037
Alignment:
Q  215 ttgatatattgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccct 301  Q
    ||||| || |||||||||||||||||||  || |||||||||| ||| |||| ||||||||| ||| | |||||| ||||| |||||    
T  51075123 ttgatgtactgtttggtagaaaagagattgaagagaaatagaggagagagaagtgttgattactttcaaaagtacaaaaatacccct 51075037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 4e-62; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 24928990 - 24929111
Alignment:
Q  18 ggttcataccccaagcataggaattgggttggtgctactcgattgggtaagtatacttgtaatgattgaattgatttgttgcagataatccatgatttgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24928990 ggttcataccccaagcataggaattgggttggtgctactcgattgggtaagtatacttgtaatgattgaattgatttgttgcagataatccatgatttgt 24929089  T
Q  118 tccctaagggtgtgttagttgt 139  Q
    ||||||||||||||||||||||    
T  24929090 tccctaagggtgtgttagttgt 24929111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 718 - 768
Target Start/End: Complemental strand, 7029128 - 7029078
Alignment:
Q  718 ttgttttatccttcatattccataatcattgttgcaatttgcaggaaagat 768  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  7029128 ttgttttatccttcatattcgataatcattgctgcaatttgcaggaaagat 7029078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 24695850 - 24695919
Alignment:
Q  263 agaattgttgattaattttagaagtaccaaaatgcccctaatt-aataaacctccaatcaaaattaattt 331  Q
    |||| ||||||||| |||||||||||||||||||||||| ||| || |||||| ||||||||||||||||    
T  24695850 agaagtgttgattatttttagaagtaccaaaatgccccttattaaaaaaaccttcaatcaaaattaattt 24695919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 247 - 331
Target Start/End: Complemental strand, 45059283 - 45059198
Alignment:
Q  247 aagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaatt-aataaacctccaatcaaaattaattt 331  Q
    ||||||||| ||||| |||| ||||||||| || ||||||||||||||| ||||| ||| || ||| || ||||||||||||||||    
T  45059283 aagaaatagggaagagagaagtgttgattatttctagaagtaccaaaataccccttattaaaaaaaacttcaatcaaaattaattt 45059198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 37324875 - 37324954
Alignment:
Q  220 atattgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgccc 299  Q
    |||||||||| | ||| |||||||||||| |||||||  ||| |||| ||||||||| ||||| |||||| |||||||||    
T  37324875 atattgtttgattgaagagagatataaaataaatagaagagagagaagtgttgattatttttaaaagtacaaaaatgccc 37324954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 41044847 - 41044900
Alignment:
Q  222 attgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgatt 275  Q
    |||||||||||||| ||| | |||||||||||||||||||||||| | ||||||    
T  41044847 attgtttggtagaatagaaagataaaagaaatagagaagaaagaagtcttgatt 41044900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 18371038 - 18370958
Alignment:
Q  222 attgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgccccta 302  Q
    ||||||||||| || ||| | ||| ||||||||||||||| |||| ||||| ||| ||||| |||||| | ||||||||||    
T  18371038 attgtttggtataagagaaagatagaagaaatagagaagagagaagtgttgtttatttttaaaagtactataatgccccta 18370958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 8e-54; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 215 - 370
Target Start/End: Original strand, 22643949 - 22644104
Alignment:
Q  215 ttgatatattgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaataaacct 314  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  22643949 ttgatgtattgtttggtagaagagagatataaaagaaatagagaagaaagaagtgttgattatttttagaagtaccaaaatacccctaactaataaacct 22644048  T
Q  315 ccaatcaaaattaatttgttaaataacttaatccaatttctattctaaattgttga 370  Q
     |||| ||||||||||| ||||||||||||||||||||| || | |||||||||||    
T  22644049 tcaataaaaattaatttattaaataacttaatccaatttttaatttaaattgttga 22644104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 215 - 373
Target Start/End: Complemental strand, 3632966 - 3632808
Alignment:
Q  215 ttgatatattgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaataaacct 314  Q
    |||||||||| |||||||||| ||||||||| |||||||| |||||||| || | ||||||  |||||||||||||||||||||||||||||||||||||    
T  3632966 ttgatatattatttggtagaagagagatatagaagaaataaagaagaaaaaagtattgattctttttagaagtaccaaaatgcccctaattaataaacct 3632867  T
Q  315 ccaatcaaaattaatttgttaaataacttaatccaatttctattctaaattgttgacga 373  Q
     |||||||||||||||| |||||||||||||| |||||| || ||||||| ||||||||    
T  3632866 tcaatcaaaattaatttattaaataacttaattcaatttttaatctaaatcgttgacga 3632808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 221 - 353
Target Start/End: Original strand, 33614177 - 33614309
Alignment:
Q  221 tattgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaataaacctccaatc 320  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || |||||||||  |||||||||| |||||| ||| |||||||||||||| |||||    
T  33614177 tattgtttggtagaagagagatataaaagaaatagagaagaaataaatgttgattatctttagaagtagcaaaatacccataattaataaaccttcaatc 33614276  T
Q  321 aaaattaatttgttaaataacttaatccaattt 353  Q
    ||||||||||| |||||||| ||||||||||||    
T  33614277 aaaattaatttattaaataatttaatccaattt 33614309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 18534284 - 18534369
Alignment:
Q  222 attgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaa 307  Q
    |||||||| ||||| ||| ||||| |||||||||||||||||||| ||||||||| ||||  |||||| |||||||||| ||||||    
T  18534284 attgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgattacttttgaaagtactaaaatgccccaaattaa 18534369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 237 - 345
Target Start/End: Original strand, 40236623 - 40236730
Alignment:
Q  237 agagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaataaacctccaatcaaaattaatttgttaa 336  Q
    ||||| |||||| ||||||||| ||||||| ||||  |||   | | ||||||||||||||||| |||||| ||| || |||||||||||||||| ||||    
T  40236623 agagagataaaataaatagagatgaaagaaatgtttgttatagtgataagtaccaaaatgcccccaattaa-aaatcttcaatcaaaattaattttttaa 40236721  T
Q  337 ataacttaa 345  Q
    |||||||||    
T  40236722 ataacttaa 40236730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 3632762 - 3632712
Alignment:
Q  394 attatttaattaatttgtaatttcatccaaataaattagaactcatttttt 444  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  3632762 attatttcattaatttgtgacttcatccaaataaattagaactcatttttt 3632712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 394 - 444
Target Start/End: Original strand, 33614374 - 33614424
Alignment:
Q  394 attatttaattaatttgtaatttcatccaaataaattagaactcatttttt 444  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||||||||||    
T  33614374 attatttcattaatttgtaaattcatccaaataaattataactcatttttt 33614424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 691 - 757
Target Start/End: Original strand, 33614689 - 33614755
Alignment:
Q  691 cttcaacttgtcttccataactttcctttgttttatccttcatattccataatcattgttgcaattt 757  Q
    ||||| ||||||| |  |||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  33614689 cttcagcttgtctcctgtaacttccctttgttttatccttcatattggataatcattgttgcaattt 33614755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 215 - 373
Target Start/End: Original strand, 13119 - 13277
Alignment:
Q  215 ttgatatattgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaataaacct 314  Q
    |||||||||| |||||||||| ||||||||| |||||||| |||||||| || | ||||||  |||||||||||||||||||||||||||||||||||||    
T  13119 ttgatatattatttggtagaagagagatatagaagaaataaagaagaaaaaagtattgattctttttagaagtaccaaaatgcccctaattaataaacct 13218  T
Q  315 ccaatcaaaattaatttgttaaataacttaatccaatttctattctaaattgttgacga 373  Q
     |||||||||||||||| |||||||||||||| |||||| || ||||||| ||||||||    
T  13219 tcaatcaaaattaatttattaaataacttaattcaatttttaatctaaatcgttgacga 13277  T

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Target: scaffold0287; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 394 - 444
Target Start/End: Original strand, 13323 - 13373
Alignment:
Q  394 attatttaattaatttgtaatttcatccaaataaattagaactcatttttt 444  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  13323 attatttcattaatttgtgacttcatccaaataaattagaactcatttttt 13373  T

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Target: chr1 (Bit Score: 87; Significance: 3e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 223 - 391
Target Start/End: Original strand, 38674270 - 38674442
Alignment:
Q  223 ttgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaataaacctccaatcaa 322  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||| | |||| ||    
T  38674270 ttgtttggtagaagagagatataaaagaaatagagaagaaagaagtgttgattatttttaaaagtaccaaaatacccctaattaataaacattcaatgaa 38674369  T
Q  323 aa-ttaatttgttaaataacttaatccaatttctattctaa---attgttgacgatgatgatgaattttttga 391  Q
    || ||||||| |||||||||||||| |||||| || | |||   |||| |||| |||||||||| ||||||||    
T  38674370 aacttaatttattaaataacttaattcaatttttaatataaattattgatgacaatgatgatgatttttttga 38674442  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 681 - 773
Target Start/End: Original strand, 38674895 - 38674986
Alignment:
Q  681 caaatgataccttcaacttgtcttccataactttcctttgttttatccttcatattccataatcattgttgcaatttgcaggaaagataataa 773  Q
    ||||| ||||||||||||||||| | | ||||| |||||||||||| |||||||||  |||||||||||||||||||||| ||||||||||||    
T  38674895 caaatcataccttcaacttgtctcctaaaacttccctttgttttatgcttcatattgaataatcattgttgcaatttgca-gaaagataataa 38674986  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 32454592 - 32454520
Alignment:
Q  223 ttgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaat 295  Q
    ||||||| || |||||||| ||||||||||||||||||| |||| |||||| || ||| | || |||||||||    
T  32454592 ttgtttgttataaaagagagataaaagaaatagagaagagagaagtgttgactattttaaaaaataccaaaat 32454520  T

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Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 15358695 - 15358610
Alignment:
Q  222 attgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaa 307  Q
    |||||||| ||||| ||| ||||| |||||||||||||||||||| ||||||||| ||||  |||||| |||||||||| ||||||    
T  15358695 attgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgattacttttgaaagtactaaaatgccccaaattaa 15358610  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 19439063 - 19439148
Alignment:
Q  222 attgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaa 307  Q
    |||||||| ||||| ||| ||||| |||||||||||||||||||| ||||||||| ||||  |||||| |||||||||| ||||||    
T  19439063 attgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgattacttttgaaagtactaaaatgccccaaattaa 19439148  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 19575212 - 19575297
Alignment:
Q  222 attgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaa 307  Q
    |||||||| ||||| ||| ||||| |||||||||||||||||||| ||||||||| ||||  |||||| |||||||||| ||||||    
T  19575212 attgtttgttagaagagaaatatagaagaaatagagaagaaagaagtgttgattacttttgaaagtactaaaatgccccaaattaa 19575297  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 22914465 - 22914393
Alignment:
Q  260 gaaagaattgttgattaattt-tagaagtaccaaaatgcccctaattaataaacctccaatcaaaattaattt 331  Q
    ||||||| ||||||||| ||| || |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  22914465 gaaagaagtgttgattattttgtaaaagtaccaaaatacccctaattaataaaccttcaatcaaaattaattt 22914393  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 247 - 331
Target Start/End: Original strand, 10405773 - 10405857
Alignment:
Q  247 aagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaataaacctccaatcaaaattaattt 331  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||| | ||  ||||||   ||||||||||||||    
T  10405773 aagaaatagagaagagagaagtgttgattatttttagaagtaccaaaatgtcccttaatagaaaaccttggatcaaaattaattt 10405857  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 3955310 - 3955395
Alignment:
Q  222 attgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaa 307  Q
    |||||||| ||||| ||| ||||| ||||||||||||||||| || ||||||||| ||||  |||||| |||||| ||| ||||||    
T  3955310 attgtttgttagaagagaaatatagaagaaatagagaagaaataagtgttgattacttttgaaagtactaaaatgtcccaaattaa 3955395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 224 - 302
Target Start/End: Complemental strand, 9636246 - 9636168
Alignment:
Q  224 tgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgccccta 302  Q
    ||||||||| || ||| | ||| ||||||||||||||| |||| ||||| ||| ||||| |||||| | ||||||||||    
T  9636246 tgtttggtataagagaaagatagaagaaatagagaagagagaagtgttgtttatttttaaaagtactataatgccccta 9636168  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 25980795 - 25980721
Alignment:
Q  221 tattgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaat 295  Q
    |||||||||||| || ||| | || ||||||||||||||||||||| |||| |||| ||||   |||||||||||    
T  25980795 tattgtttggtataagagaaagatgaaagaaatagagaagaaagaagtgttaattattttttatagtaccaaaat 25980721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 17772911 - 17772826
Alignment:
Q  222 attgtttggtagaaaagagatataaaagaaatagagaagaaagaattgttgattaattttagaagtaccaaaatgcccctaattaa 307  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| ||||||||| ||||  |||||| ||||| |||| ||||||    
T  17772911 attgtttggtagaaaagaaagatagaagaaatagagaagaaagaagtgttgattacttttgaaagtactaaaataccccaaattaa 17772826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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