View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13723_low_2 (Length: 396)

Name: NF13723_low_2
Description: NF13723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13723_low_2
NF13723_low_2
[»] chr2 (4 HSPs)
chr2 (86-382)||(8019915-8020211)
chr2 (9-86)||(8019806-8019883)
chr2 (87-223)||(22391284-22391420)
chr2 (320-378)||(22391574-22391632)
[»] chr3 (41 HSPs)
chr3 (87-242)||(28132105-28132260)
chr3 (87-242)||(28510616-28510771)
chr3 (87-242)||(28147889-28148044)
chr3 (87-242)||(28183922-28184077)
chr3 (87-242)||(27975507-27975662)
chr3 (87-242)||(28081898-28082053)
chr3 (87-239)||(28002333-28002485)
chr3 (87-242)||(28159358-28159513)
chr3 (87-242)||(28481444-28481599)
chr3 (87-242)||(27918527-27918682)
chr3 (140-242)||(28053683-28053785)
chr3 (140-242)||(28064108-28064210)
chr3 (87-242)||(27460990-27461142)
chr3 (87-242)||(28035583-28035738)
chr3 (87-189)||(17746167-17746269)
chr3 (87-189)||(19047487-19047589)
chr3 (87-242)||(11418886-11419041)
chr3 (87-189)||(27392230-27392332)
chr3 (87-182)||(12146179-12146274)
chr3 (87-187)||(18026466-18026566)
chr3 (87-189)||(27347569-27347671)
chr3 (318-380)||(28159634-28159696)
chr3 (311-381)||(28148170-28148242)
chr3 (319-380)||(28184199-28184260)
chr3 (87-171)||(26114998-26115082)
chr3 (87-171)||(26142310-26142394)
chr3 (87-171)||(26210106-26210190)
chr3 (87-182)||(27376362-27376457)
chr3 (244-371)||(28035806-28035932)
chr3 (87-171)||(26180615-26180699)
chr3 (316-376)||(28481226-28481286)
chr3 (316-376)||(28510407-28510467)
chr3 (92-171)||(26237350-26237429)
chr3 (313-380)||(28053934-28054000)
chr3 (313-380)||(28064359-28064425)
chr3 (87-171)||(26131578-26131662)
chr3 (320-376)||(28082191-28082247)
chr3 (241-371)||(28002553-28002682)
chr3 (87-137)||(28481909-28481959)
chr3 (9-62)||(28081776-28081826)
chr3 (317-381)||(27460800-27460864)
[»] scaffold0257 (3 HSPs)
scaffold0257 (87-242)||(17484-17639)
scaffold0257 (241-277)||(17704-17740)
scaffold0257 (312-344)||(17766-17798)
[»] scaffold0043 (1 HSPs)
scaffold0043 (82-223)||(54687-54828)
[»] chr7 (2 HSPs)
chr7 (87-242)||(8693277-8693432)
chr7 (316-381)||(8693152-8693216)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 86 - 382
Target Start/End: Original strand, 8019915 - 8020211
Alignment:
Q  86 catgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019915 catgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtg 8020014  T
Q  186 atgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaaaactatccctggcttcagcatcaacagcagacttcatatttga 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020015 atgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaaaactatccctggcttcagcatcaacagcagacttcatatttga 8020114  T
Q  286 tattaatggtttatatgctagcaagtttggctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacatatt 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020115 tattaatggtttatatgctagcaagtttggctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacatatt 8020211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 8019806 - 8019883
Alignment:
Q  9 agagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaaaacatgctttccaaagctaggaac 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019806 agagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaaaacatgctttccaaagctaggaac 8019883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 87 - 223
Target Start/End: Original strand, 22391284 - 22391420
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    ||||||||||||||||||||||||||||||||||||||||| |   |||  | ||||| ||||||||| |||||||||||||||||||| ||||||  |     
T  22391284 atgtctttccaatctccatatgtaaagagcttcctgagctagaggctctagtgataagtgaagcatataagctagaggaaatatttgtatgtgaagaagg 22391383  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgta 223  Q
    |||||| |||||  | || |||||||| |||||||||    
T  22391384 tgatcagaaagtcaatatgccaaatctaaaagttgta 22391420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 22391574 - 22391632
Alignment:
Q  320 ggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattaca 378  Q
    |||||||||| | | |||||||||| ||| |||||||| ||||||||||| ||||||||    
T  22391574 ggtacacactttgtccaatatttttgaaatctattacatgttggctgtaattaattaca 22391632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 8e-71; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 28132105 - 28132260
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  28132105 atgtctttccaatctccgtatgtaaagagcttcctgagctatattatctgatcataagagaagcagacgagttagaggaaatatttgtaagtgaaggtga 28132204  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28132205 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 28132260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 28510771 - 28510616
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |  ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  28510771 atgtctttccaatctccatatctaaagagcttccagagctaattgttctgatcataagagaagcagatgagttagaggaaatatttgtaagtgaaggtga 28510672  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  28510671 tgatcacaaagtggagattccaaatctaaaacttgtaatatttgaaaatctaccaa 28510616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 28147889 - 28148044
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    |||| |||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||| ||||| |||||||||||||||||||||||  |||    
T  28147889 atgtgtttccaatctccatatctaaagagcttcctgagctaaaggttctgatcataagagaagcagatgagttagaggaaatatttgtaagtgaatttga 28147988  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  28147989 tgatcacaaagtggagattccaaatctaaaacttgtaatatttgaaaatctaccaa 28148044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 28183922 - 28184077
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  28183922 atgtgtttccaatctccatatgtaaagagcttcctgagctaaatgttctgatgataagagaagcagatgagctggaggaaatatttgtaagtgaaggtga 28184021  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    |||||||||||||||||||||||||||  ||  |||| ||||||||||||||||||    
T  28184022 tgatcacaaagtggagattccaaatctagaatgtgtagtatttgaaaatctaccaa 28184077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 27975507 - 27975662
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    |||| |||||||||||||||||||||||||||| ||||||| |   |||  | ||||||||||||  |||||||||||||||||||||||||||||||||    
T  27975507 atgtgtttccaatctccatatgtaaagagcttcttgagctagaggttctcttgataagagaagcagctgagctagaggaaatatttgtaagtgaaggtga 27975606  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27975607 tgatcacaaagtggagattccaaatctgatagttgtaatatttgaaaatctaccaa 27975662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 28081898 - 28082053
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  28081898 atgtctttccaatctccgtatataaagagcttcctgagctaaattatctgatcataagagaagcagatgagttagaggaaatatttgtaagcgaaggtga 28081997  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    |||||||||||||||||||||| ||||   | ||||| ||||||||||||| ||||    
T  28081998 tgatcacaaagtggagattccatatctacgatttgtagtatttgaaaatcttccaa 28082053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 87 - 239
Target Start/End: Original strand, 28002333 - 28002485
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||||    
T  28002333 atgtgtttccaatctccatatgtaaagagcttcctgagctaaatgttctgaccataagagaagcagacgaggtagaggaaatatttggaagtgaaggtga 28002432  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 239  Q
    |||||||||||| |||||||||||||| ||| ||||| |||||||||||||||    
T  28002433 tgatcacaaagtcgagattccaaatctaaaatttgtagtatttgaaaatctac 28002485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 28159358 - 28159513
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||| || |||||||||||||||||||||||| |||||||||    
T  28159358 atgtatttccaatctccatatgtaaagagcttcctgagctaaatgttctgatgataagagaatcagatgagctagaggaaatatttgtaattgaaggtga 28159457  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    |||||| |||||| |||||||||||||  ||  |||| ||||||||||||||||||    
T  28159458 tgatcagaaagtgaagattccaaatctagaatgtgtagtatttgaaaatctaccaa 28159513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 28481599 - 28481444
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    |||| |||||||||||||||| ||||||||||||  ||||||||  ||| ||||||||||||||| | ||| | ||||||||||||| ||||||||||||    
T  28481599 atgtgtttccaatctccatatctaaagagcttccaaagctaaatgttctcatcataagagaagcagacgagttcgaggaaatatttggaagtgaaggtga 28481500  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    |||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||    
T  28481499 tgatcacaaagtcgagattccaaatctaaaatttgtagtatttgaaaatctaccaa 28481444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 27918527 - 27918682
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    |||||||||||||||||||||||||||| |||||||||||||| | |||  | |||||||||||| ||||||| || |||||||||| || |||||||||    
T  27918527 atgtctttccaatctccatatgtaaagaccttcctgagctaaagtgtctagtgataagagaagcagatgagctggatgaaatatttgcaaatgaaggtga 27918626  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    |||||| ||||||||||||||||||||  ||  | || ||||||||||||||||||    
T  27918627 tgatcagaaagtggagattccaaatctagaatatctagtatttgaaaatctaccaa 27918682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 28053683 - 28053785
Alignment:
Q  140 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 239  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  28053683 ataagagaagcagatgagctagaggaaatatttgtaagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaaaatctac 28053782  T
Q  240 caa 242  Q
    |||    
T  28053783 caa 28053785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 28064108 - 28064210
Alignment:
Q  140 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 239  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  28064108 ataagagaagcagatgagctagaggaaatatttgtaagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaaaatctac 28064207  T
Q  240 caa 242  Q
    |||    
T  28064208 caa 28064210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 27461142 - 27460990
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    ||||||||||||| ||||||||||||||||||||||||||| |   ||| |||||||||||||||   |||||||||||||||||||||||||||   ||    
T  27461142 atgtctttccaatgtccatatgtaaagagcttcctgagctagaggttctaatcataagagaagca---gagctagaggaaatatttgtaagtgaaaaaga 27461046  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    |||||| ||| |||||||||||||||| ||| ||||| |||||| |||||||||||    
T  27461045 tgatcagaaactggagattccaaatctaaaacttgtagtatttgtaaatctaccaa 27460990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 28035583 - 28035738
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    ||||||||||||||||||||||||||||||||||  || || |   ||| || |||||||||||| || || | || |||||||||| ||||||||||||    
T  28035583 atgtctttccaatctccatatgtaaagagcttcccaagttagaagctctaatgataagagaagcagataagatggaagaaatatttgcaagtgaaggtga 28035682  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    |||||| |||||||||||||||||||| ||| ||||| | ||||||||||||||||    
T  28035683 tgatcagaaagtggagattccaaatctaaaatttgtagtgtttgaaaatctaccaa 28035738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 17746269 - 17746167
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    ||||||||||||||||||||||||||||||||||||||||| |   ||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  17746269 atgtctttccaatctccatatgtaaagagcttcctgagctagagggtctaatgataagagaagcatatgagctagaggaaatatttggaagtgaaggtga 17746170  T
Q  187 tga 189  Q
    |||    
T  17746169 tga 17746167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 19047589 - 19047487
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    ||||||||||||||||||||||||||||||||||||||||| |   ||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  19047589 atgtctttccaatctccatatgtaaagagcttcctgagctagagggtctaatgataagagaagcatatgagctagaggaaatatttggaagtgaaggtga 19047490  T
Q  187 tga 189  Q
    |||    
T  19047489 tga 19047487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 11418886 - 11419041
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    |||| |||||||||||| | ||||||||||||||||||||| ||  |||||| |||||||| ||| |||||||||||||||||||||||||||||| |||    
T  11418886 atgtttttccaatctccctgtgtaaagagcttcctgagctatatgttctgatgataagagacgcagatgagctagaggaaatatttgtaagtgaagatga 11418985  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    | |||| |||   |||||||| ||||| ||| || || ||||||||||||| ||||    
T  11418986 tcatcagaaaagcgagattccgaatcttaaatttttagtatttgaaaatctgccaa 11419041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 27392332 - 27392230
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    |||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||| | |||| |||    
T  27392332 atgtgtttccaatctccatatgtaaagagcttcctgagctaaaggttctgatcataagagaagcagatgagctagaggaaatatttgtatgcgaagttga 27392233  T
Q  187 tga 189  Q
    |||    
T  27392232 tga 27392230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 12146179 - 12146274
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaag 182  Q
    |||| |||||||||||||||||||||||||||||||||||| | | ||| || |||||||||||| ||||||||||||||||||||||| ||||||    
T  12146179 atgtgtttccaatctccatatgtaaagagcttcctgagctacagtttctaattataagagaagcaaatgagctagaggaaatatttgtatgtgaag 12146274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 18026566 - 18026466
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    ||||||||||||||||||||| |||||||||||||||||||||   | | ||||||  ||||||| |  |||||||||||||||||||| |||||| |||    
T  18026566 atgtctttccaatctccatatataaagagcttcctgagctaaaggttataatcatagtagaagcagagaagctagaggaaatatttgtatgtgaagttga 18026467  T
Q  187 t 187  Q
    |    
T  18026466 t 18026466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 189
Target Start/End: Original strand, 27347569 - 27347671
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    |||| |||||||||||||||||||||||||||||||||||| |   ||| |||||||||||| || | ||  | ||||||||||||||| || |||||||    
T  27347569 atgtgtttccaatctccatatgtaaagagcttcctgagctagaggctctaatcataagagaatcagaagaattggaggaaatatttgtatgtaaaggtga 27347668  T
Q  187 tga 189  Q
    |||    
T  27347669 tga 27347671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 28159634 - 28159696
Alignment:
Q  318 acggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 380  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  28159634 acggtacacactctatccaatatttttaaaaactattacatgtttgctgtaaattattacata 28159696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 381
Target Start/End: Original strand, 28148170 - 28148242
Alignment:
Q  311 tttggctacggtacacactctatacaatat--ttttaaaaactattacacgttggctgtaaataattacatat 381  Q
    ||||||||||||||| ||||||| ||||||  ||||||||||||||||| |||||| ||||||||||||||||    
T  28148170 tttggctacggtacagactctatccaatatatttttaaaaactattacatgttggccgtaaataattacatat 28148242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 380
Target Start/End: Original strand, 28184199 - 28184260
Alignment:
Q  319 cggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 380  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  28184199 cggtacacactctatccaatatttttaaaaactattacatgtttgctgtaaattattacata 28184260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 26115082 - 26114998
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 171  Q
    ||||||||||| ||||||| |||||||||||||||||||||||   | |||| |||||||||||| ||||| |||| ||||||||    
T  26115082 atgtctttccagtctccatttgtaaagagcttcctgagctaaaggttatgataataagagaagcaaatgagttagaagaaatatt 26114998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 26142394 - 26142310
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 171  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||   | || | |||||||||||| |||||||||||||||||||    
T  26142394 atgtctttccaatctccatttgtaaagagtttcctaagctaaaggctgtgttgataagagaagcaaatgagctagaggaaatatt 26142310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 26210190 - 26210106
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 171  Q
    |||| |||||| ||||||| ||||||||| ||||||||||||||  | |||| |||||||||||| ||||| |||||||||||||    
T  26210190 atgtgtttccagtctccatttgtaaagagtttcctgagctaaatgttatgataataagagaagcaaatgagttagaggaaatatt 26210106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 27376362 - 27376457
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaag 182  Q
    ||||||||||||||||||||||| ||||||||||||||||| |   |||  | |||| |||| || || |||||||||||||||||||| ||||||    
T  27376362 atgtctttccaatctccatatgtgaagagcttcctgagctagagagtctagtgataaaagaatcagataagctagaggaaatatttgtatgtgaag 27376457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 371
Target Start/End: Original strand, 28035806 - 28035932
Alignment:
Q  244 actatccctggcttcagcatcaacagcagacttcatatttgatattaatggtttatatgctagcaagtttggctacggtacacactctatacaatatttt 343  Q
    |||||| ||||||||| |||||||| || ||||   |  |||||||  |||||||||| || || |||||| ||||||||| |||||||| |||||||||    
T  28035806 actatctctggcttcatcatcaacaacaaactttgaaaatgatatttctggtttatattctggcgagtttgactacggtacgcactctatccaatatttt 28035905  T
Q  344 taaaaactattacacgttggctgtaaat 371  Q
    | |||||||||| | |||||||||||||    
T  28035906 t-aaaactattaaatgttggctgtaaat 28035932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 26180699 - 26180615
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 171  Q
    |||| |||||| ||||||| ||||||||| |||||||||||||   | || | |||||||||||| |||||||||||||||||||    
T  26180699 atgtgtttccagtctccatttgtaaagagtttcctgagctaaaggttatgttgataagagaagcaaatgagctagaggaaatatt 26180615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 28481286 - 28481226
Alignment:
Q  316 ctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataatta 376  Q
    |||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||| ||||    
T  28481286 ctacggtacacattctatccaatattttttaaaactattacatgttggctgtaaattatta 28481226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 28510467 - 28510407
Alignment:
Q  316 ctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataatta 376  Q
    |||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||| ||||    
T  28510467 ctacggtacacattctatccaatattttttaaaactattacatgttggctgtaaattatta 28510407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 26237429 - 26237350
Alignment:
Q  92 tttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 171  Q
    |||||| ||||||| ||||||||| |||||||||||||   | || |||||||||||||| ||||| |||||||||||||    
T  26237429 tttccagtctccatttgtaaagagtttcctgagctaaaggttatgttcataagagaagcaaatgagttagaggaaatatt 26237350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 28053934 - 28054000
Alignment:
Q  313 tggctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 380  Q
    |||||| |||||||||||||| ||||||| ||||||||||||| | ||||||||||||| ||||||||    
T  28053934 tggctatggtacacactctatccaatattcttaaaaactatta-atgttggctgtaaattattacata 28054000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 28064359 - 28064425
Alignment:
Q  313 tggctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 380  Q
    |||||| |||||||||||||| ||||||| ||||||||||||| | ||||||||||||| ||||||||    
T  28064359 tggctatggtacacactctatccaatattcttaaaaactatta-atgttggctgtaaattattacata 28064425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 26131662 - 26131578
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 171  Q
    ||||||||||| ||||||| ||||||||| ||||| |||||||   | |||| ||||| |||||| |||||||||||| ||||||    
T  26131662 atgtctttccagtctccatttgtaaagagtttcctaagctaaaggttatgatgataagtgaagcaaatgagctagagggaatatt 26131578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 28082191 - 28082247
Alignment:
Q  320 ggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataatta 376  Q
    |||||||| ||||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  28082191 ggtacacattctatccaatatttttaaaaactattacatgttgactgtaaattatta 28082247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 371
Target Start/End: Original strand, 28002553 - 28002682
Alignment:
Q  241 aaaactatccctggcttcagcatcaacagcagacttcatatttgatattaatggtttatatgctagcaagtttggctacggtacacactctatacaatat 340  Q
    ||||||||| ||| |||||||||||||||||||||||  |  |||||||  |||||||  | |   |  ||||| | | |||||||||||||| ||||||    
T  28002553 aaaactatctctgacttcagcatcaacagcagacttcgaaaatgatatttctggtttacgttcggtctggtttgacgagggtacacactctatccaatat 28002652  T
Q  341 ttttaaaaactattacacgttggctgtaaat 371  Q
    |||| |||||||||| | |||||||||||||    
T  28002653 tttt-aaaactattaaatgttggctgtaaat 28002682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 28481959 - 28481909
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctga 137  Q
    |||| ||||||||||||||||||||||| |||||||||||| || ||||||    
T  28481959 atgtgtttccaatctccatatgtaaagaccttcctgagctatatgatctga 28481909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 28081776 - 28081826
Alignment:
Q  9 agagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 62  Q
    |||||||||| |||||||||||   |||||||||||| ||||||||||||||||    
T  28081776 agagttaaagcatattattgaa---gatgatttggagaataaaaaatcctcaaa 28081826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 381
Target Start/End: Complemental strand, 27460864 - 27460800
Alignment:
Q  317 tacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacatat 381  Q
    ||||||||||||||||| |||| ||| | ||||  |||||| |||||||||||||| || |||||    
T  27460864 tacggtacacactctatccaatctttctgaaaatcattacatgttggctgtaaatatttgcatat 27460800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 17484 - 17639
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    |||| |||||||||||||||||||||||||||||||||||||| | |||  | |||||||||||| |||||||||||||||||| || ||||||||||||    
T  17484 atgtgtttccaatctccatatgtaaagagcttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtga 17583  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    |||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||    
T  17584 tgatcacaaaatggagattccaaatctaaaatttgtagtatttgaaaatctaccaa 17639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 17704 - 17740
Alignment:
Q  241 aaaactatccctggcttcagcatcaacagcagacttc 277  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  17704 aaaactatctctggcttcagcatcaacaccagacttc 17740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 17766 - 17798
Alignment:
Q  312 ttggctacggtacacactctatacaatattttt 344  Q
    |||||||||||||||||||||| ||||||||||    
T  17766 ttggctacggtacacactctatccaatattttt 17798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 54828 - 54687
Alignment:
Q  82 ggaacatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaa 181  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  54828 ggaaaatgtctttccaatctccatatgtaaagagcttcctgagctagatgctctaatcataagagaagcacatgagctagaggaaatatttgtatgtgaa 54729  T
Q  182 ggtgatgatcacaaagtggagattccaaatctgaaagttgta 223  Q
    |  | |||||| |||||  |  ||||||||||||||||||||    
T  54728 gaaggtgatcagaaagtcaatcttccaaatctgaaagttgta 54687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 8693432 - 8693277
Alignment:
Q  87 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 186  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||||| || |||||||||| ||||||||||      
T  8693432 atgtctttccagtctccatatgtaacgagcttcctgagctaaatgttctgatcataagagaagcagatgagctggatgaaatatttgcaagtgaaggtcg 8693333  T
Q  187 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 242  Q
    |||| | ||||| ||||||||||||||  ||  |||| ||||||||||||| ||||    
T  8693332 tgatgagaaagtcgagattccaaatctagaatatgtagtatttgaaaatcttccaa 8693277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 8693216 - 8693152
Alignment:
Q  316 ctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacatat 381  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  8693216 ctacggtacacactctatccaatattttttaaa-ctattacacgttggctgtaaataattacatat 8693152  T

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