View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13723_low_3 (Length: 303)
Name: NF13723_low_3
Description: NF13723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13723_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 43170003 - 43169717
Alignment:
| Q |
1 |
ttcaaattcacggcccacgcgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43170003 |
ttcaaattcacggcccacgcgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagct |
43169904 |
T |
|
| Q |
101 |
tc-ggtggaggtgaaggtgatcaatgtgataagatgtggaacacgcgcacgggtgcacaattgaattctgttgacacgggatcagaagtaggtgctttgc |
199 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43169903 |
tcaggtggaggtgaaggtgatcaatgtattaagatgtggaacacgcacacgggtgcacaattgaattctgttgacacgggatcagaagtaggtgctttgc |
43169804 |
T |
|
| Q |
200 |
tctggaacgaaaatgagcgtgagctgcgtagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttga |
286 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43169803 |
tctggaacgaaaatgagcgtgagctgcttagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttga |
43169717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 43218332 - 43218617
Alignment:
| Q |
1 |
ttcaaattcacggcccacgcgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagct |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43218332 |
ttcaaattcacggcccacacgttggcttcacaagtttgaggaacacacagctcctgtcaaggcgttggcttggtgtccgtttcagtgtaatttattagct |
43218431 |
T |
|
| Q |
101 |
tcggtggaggtgaaggtgatcaatgtgataagatgtggaacacgcgcacgggtgcacaattgaattctgttgacacgggatcagaagtaggtgctttgct |
200 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
43218432 |
tc-----aggtgaaggtgatcaatgtattaagatgtggaacacccacacgggtgcacgattgaactctgttgacacgggatcagaagttggcgctttgct |
43218526 |
T |
|
| Q |
201 |
ctggaacgaaaatgagcgtgagctgcgtagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttgatgaag |
291 |
Q |
| |
|
||| |||||||||||| ||||||| | ||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
43218527 |
ctgtaacgaaaatgagtgtgagcttcttagctcacatggtttccctcagaaccaactcactctttggaagtatccttcaatgttgaagaag |
43218617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 9e-73; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 19025969 - 19025687
Alignment:
| Q |
1 |
ttcaaattcacggcccacgcgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagct |
100 |
Q |
| |
|
||||| ||||||| | || ||||||||||| ||||||||||||||||||||| || ||||||| |||| ||||||||||||||| || |||| |||||| |
|
|
| T |
19025969 |
ttcaagttcacggactacccgttggcttcataagtttgaggaacacacagctgctgtcaaggcgctggcgtggtgtccgtttcagagtgatttgttagct |
19025870 |
T |
|
| Q |
101 |
tc-ggtggaggtgaaggtgatcaatgtgataagatgtggaacacgcgcacgggtgcacaattgaattctgttgacacgggatcagaagtaggtgctttgc |
199 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
19025869 |
tctggtggaggtgaaggtgatcaatgtattaagctgtggaacatgcgcacgggtgcacgcttggattctgttgacacgggatcagaggtatgcgctttgc |
19025770 |
T |
|
| Q |
200 |
tctggaacgaaaatgagcgtgagctgcgtagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatg |
282 |
Q |
| |
|
|||||||| |||| ||||| ||||| | ||||||||| ||||| || |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
19025769 |
tctggaacaaaaacgagcgcgagcttcttagctcacatggtttgactaagaaccaaattaccctttggaagtatccttccatg |
19025687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 20728667 - 20728949
Alignment:
| Q |
1 |
ttcaaattcacggcccacgcgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagct |
100 |
Q |
| |
|
||||| ||||||| | || ||||||||||| ||||||||||||||||||||| || ||||||| |||| ||||||||||||||| || |||| |||||| |
|
|
| T |
20728667 |
ttcaagttcacggactacccgttggcttcataagtttgaggaacacacagctgctgtcaaggcgctggcgtggtgtccgtttcagagtgatttgttagct |
20728766 |
T |
|
| Q |
101 |
tc-ggtggaggtgaaggtgatcaatgtgataagatgtggaacacgcgcacgggtgcacaattgaattctgttgacacgggatcagaagtaggtgctttgc |
199 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
20728767 |
tctggtggaggtgaaggtgatcaatgtattaagctgtggaacatgcgcacgggtgcacgcttggattctgttgacacgggatcagaggtatgcgctttgc |
20728866 |
T |
|
| Q |
200 |
tctggaacgaaaatgagcgtgagctgcgtagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatg |
282 |
Q |
| |
|
|||||||| |||| ||||| ||||| | ||||||||| ||||| || |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
20728867 |
tctggaacaaaaacgagcgcgagcttcttagctcacatggtttgactaagaaccaaattaccctttggaagtatccttccatg |
20728949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 23 - 278
Target Start/End: Complemental strand, 43526709 - 43526453
Alignment:
| Q |
23 |
tggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttc-ggtggaggtgaaggtgatc |
121 |
Q |
| |
|
|||||||||| |||||||||||||| |||| || | |||||| ||||||||||||| |||||| ||||| || | ||||| |||||||||| |||||||| |
|
|
| T |
43526709 |
tggcttcacaggtttgaggaacacatagctgctgtgaaggcactggcttggtgtccctttcagggtaatctactggcttctggtggaggtggaggtgatc |
43526610 |
T |
|
| Q |
122 |
aatgtgataagatgtggaacacgcgcacgggtgcacaattgaattctgttgacacgggatcagaagtaggtgctttgctctggaacgaaaatgagcgtga |
221 |
Q |
| |
|
| || |||| |||||||||| | ||| ||||| |||||||||||||||||| ||||| ||||| ||||| |||| |||||| | || |||||||| |
|
|
| T |
43526609 |
attgcattaagctgtggaacacacacactggtgcgagattgaattctgttgacactggatcgcaagtatgtgctctgctatggaaccagaacgagcgtga |
43526510 |
T |
|
| Q |
222 |
gctgcgtagctcacacggtttctctcagaaccaacttactctttggaagtatccttc |
278 |
Q |
| |
|
||| | ||||||||| |||||| | ||||||| ||||| ||||||||||||||||| |
|
|
| T |
43526509 |
gctacttagctcacatggtttcaccgagaaccagcttaccctttggaagtatccttc |
43526453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 18685742 - 18686009
Alignment:
| Q |
20 |
cgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttc-ggtggaggtgaaggtg |
118 |
Q |
| |
|
||||||||| | | |||||| ||||||| |||| || | |||||| ||||||||||||| |||||| ||||| |||| ||||| |||||||| | ||||| |
|
|
| T |
18685742 |
cgttggctttataggtttgatgaacacaaagctgctgtgaaggcactggcttggtgtccttttcagggtaatctattggcttctggtggaggcggaggtg |
18685841 |
T |
|
| Q |
119 |
atcaatgtgataagatgtggaacacgcgcacgggtgcacaattgaattctgttgacacgggatcagaagtaggtgctttgctctggaacgaaaatgagcg |
218 |
Q |
| |
|
|| || | ||| | ||||||||| ||| ||||| || ||||||||||||| |||||||| | ||| ||||||||||||||| | |||||||||| |
|
|
| T |
18685842 |
attgttgcgtaaagctatggaacacgggcatgggtgaacgcatgaattctgttgatacgggatcgcaggtatgtgctttgctctggagcaaaaatgagcg |
18685941 |
T |
|
| Q |
219 |
tgagctgcgtagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttga |
286 |
Q |
| |
|
||||| | ||||||||| ||||| |||||||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
18685942 |
cgagcttcttagctcacatggtttgactcagaaccagcttaccctttggaagtatccttcaatgttga |
18686009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 278
Target Start/End: Complemental strand, 13119250 - 13118992
Alignment:
| Q |
21 |
gttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttc-ggtggaggtgaaggtga |
119 |
Q |
| |
|
|||||||||||| |||| | ||||||| |||| || | |||||| ||||||||||||| |||||| |||| |||| ||||| |||||||||| |||||| |
|
|
| T |
13119250 |
gttggcttcacaggtttaatgaacacaaagctgctgtgaaggcactggcttggtgtccttttcaggctaatctattggcttctggtggaggtggaggtga |
13119151 |
T |
|
| Q |
120 |
tcaatgtgataagatgtggaacacgcgcacgggtgcacaattgaattctgttgacacgggatcagaagtaggtgctttgctctggaacgaaaatgagcgt |
219 |
Q |
| |
|
|| || |||| |||||||||| | ||||||||||| ||| ||||||||||||| |||||| | ||| || | |||| |||||| | || |||||| |
|
|
| T |
13119150 |
tcgttgcattaagctgtggaacacacacacgggtgcacgcttggattctgttgacactggatcacaggtatctggtctgctgtggaaccagaacgagcgt |
13119051 |
T |
|
| Q |
220 |
gagctgcgtagctcacacggtttctctcagaaccaacttactctttggaagtatccttc |
278 |
Q |
| |
|
||||| | |||||||||||||||| | ||||||| ||||| ||||||| |||||||| |
|
|
| T |
13119050 |
gagcttcttagctcacacggtttcacggagaaccagcttaccctttggagctatccttc |
13118992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 16694694 - 16694953
Alignment:
| Q |
20 |
cgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttc-ggtggaggtgaaggtg |
118 |
Q |
| |
|
||||||||||||| ||| ||||||||| | || || | |||||| ||||||||||||| || ||| ||||| |||| ||||| |||||||||| | || |
|
|
| T |
16694694 |
cgttggcttcacaggttcgaggaacacgaatctgctgtgaaggcactggcttggtgtcctttccagggtaatctattggcttctggtggaggtgcacttg |
16694793 |
T |
|
| Q |
119 |
atcaatgtgataagatgtggaacacgcgcacgggtgcacaattgaattctgttgacacgggatcagaagtaggtgctttgctctggaacgaaaatgagcg |
218 |
Q |
| |
|
||| || |||| |||||||||| | ||||||| | |||| || ||||||||||||||||| ||||| ||||| |||| ||||| ||||||||| |
|
|
| T |
16694794 |
atcgttgcattaagctgtggaacacacaaacgggtgaaaaattaaactctgttgacacgggatcgcaagtatgtgctctgctgtggaataaaaatgagcc |
16694893 |
T |
|
| Q |
219 |
tgagctgcgtagctcacacggtttctctcagaaccaacttactctttggaagtatccttc |
278 |
Q |
| |
|
|||||| | |||||| || |||||| | ||||||| |||| || ||||||||| |||| |
|
|
| T |
16694894 |
tgagcttcttagctctcatggtttccatgagaaccagcttatcctatggaagtattcttc |
16694953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 17668930 - 17669189
Alignment:
| Q |
20 |
cgttggcttcacaagtttgaggaacacacagctcctatcaaggcattggcttggtgtccgtttcagcgtaatttattagcttc-ggtggaggtgaaggtg |
118 |
Q |
| |
|
||||||||||||| ||| ||||||||| | || || | |||||| ||||||||||||| || ||| ||||| |||| ||||| |||||||||| | || |
|
|
| T |
17668930 |
cgttggcttcacaggttcgaggaacacgaatctgctgtgaaggcactggcttggtgtcctttccagggtaatctattggcttctggtggaggtgcacttg |
17669029 |
T |
|
| Q |
119 |
atcaatgtgataagatgtggaacacgcgcacgggtgcacaattgaattctgttgacacgggatcagaagtaggtgctttgctctggaacgaaaatgagcg |
218 |
Q |
| |
|
||| || |||| |||||||||| | ||||||| | |||| || ||||||||||||||||| ||||| ||||| |||| ||||| ||||||||| |
|
|
| T |
17669030 |
atcgttgcattaagctgtggaacacacaaacgggtgaaaaattaaactctgttgacacgggatcgcaagtatgtgctctgctgtggaataaaaatgagcc |
17669129 |
T |
|
| Q |
219 |
tgagctgcgtagctcacacggtttctctcagaaccaacttactctttggaagtatccttc |
278 |
Q |
| |
|
|||||| | |||||| || |||||| | ||||||| |||| || ||||||||| |||| |
|
|
| T |
17669130 |
tgagcttcttagctctcatggtttccatgagaaccagcttatcctatggaagtattcttc |
17669189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University