View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13724_high_12 (Length: 258)
Name: NF13724_high_12
Description: NF13724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13724_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 42751582 - 42751463
Alignment:
| Q |
68 |
atagcaccatcttgagttgaatcatgcatatcttagttgaattctcacaactctgtttcaccttttttctaccgtttattttttctaagatacatattca |
167 |
Q |
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| T |
42751582 |
atagcaccatcttgagttgaatcatgcatatcttagttgaattctcacaactctgtttcaccttttttctaccgtttattttttctaagatacatattca |
42751483 |
T |
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| Q |
168 |
catgtatctataaattgttt |
187 |
Q |
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| T |
42751482 |
catgtatctataaattgttt |
42751463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 42751447 - 42751402
Alignment:
| Q |
173 |
atctataaattgtttaagtattgggtaaaatatttttaaaaagtaa |
218 |
Q |
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| T |
42751447 |
atctataaattgtttaagtattgggtaaaatatttttaaaaagtaa |
42751402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42751644 - 42751600
Alignment:
| Q |
1 |
caaaaggcaacaatattgattcaagtatagcaccatctcctctcg |
45 |
Q |
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| T |
42751644 |
caaaagacaacaatattgattcaagtatagcaccatctcctctcg |
42751600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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