View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13724_high_5 (Length: 528)
Name: NF13724_high_5
Description: NF13724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13724_high_5 |
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| [»] scaffold0006 (5 HSPs) |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 460; Significance: 0; HSPs: 5)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 512
Target Start/End: Complemental strand, 131249 - 130751
Alignment:
| Q |
11 |
cacagagagcgaatacttgaaggttgtgttgagcaagggcacctagtcagctaataacctatatgtgctcatagtttgtgagagtccataggttgtataa |
110 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
131249 |
cacagagagtgaatacttgaaggttgtgttgagcaagggcacctagtcagctaataacctatatgtgctcatagtttgtgagagtccataggttgtataa |
131150 |
T |
|
| Q |
111 |
tcatttagataagattgggagaaaaactgagaaaccgatcatcaatattgtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattcccta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
131149 |
tcatttagataagattgggagaaaaactgagaaaccgatcatcaat---gtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattcccta |
131053 |
T |
|
| Q |
211 |
tatttgtcctgttgttgagttcttattgtcacttttagcaggaagttatcattagaaggttctgcacaatgtgagaaagtacaaaagaacatggaagtag |
310 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
131052 |
tatttgtcctgttgttcagttcttattgtcgcttttagcaggaagttatcattagcaggttctgcacaatgtgaaaaagtacaaaagaacatggaactag |
130953 |
T |
|
| Q |
311 |
tcaatttattgtttttctgaagaagatatatgataaggaaattttgcgtagaggagattgatgcttcccaacggttcaggtgtcagaggattcgcttcct |
410 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130952 |
tcaatttattgtttttctgaagaagatatatgataaggaaattttgcatagaggagattgatgcttcccaacggttcaggtgtcagaggattcgcttcct |
130853 |
T |
|
| Q |
411 |
tccatggaactagagggattgggttctgccactgcctcgttagaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataag |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130852 |
tccatggaactagagggattgggttctgccactgcctcgttagaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataag |
130753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 360 - 512
Target Start/End: Complemental strand, 82193 - 82039
Alignment:
| Q |
360 |
agaggagattgatgcttcccaacggttcaggtgtcagaggattcgcttccttccatggaactagagggattgggttctgccactgcctc--gttagaatt |
457 |
Q |
| |
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|||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||| || || |||||| | || || ||||| |
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| T |
82193 |
agaggagattgatgattccccacggttcagctgttggaggattcgcttccttccatggaaccagagggatcggattttgccaccgattcatatttgaatt |
82094 |
T |
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| Q |
458 |
tcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtg |
512 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||| |
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| T |
82093 |
tcgtaaccatcaccaacgctctttcgatcaatttctcgcaaccacctgataagtg |
82039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 194870 - 194825
Alignment:
| Q |
237 |
tgtcacttttagcaggaagttatcattagaaggttctgcacaatgt |
282 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
194870 |
tgtcacttttagcaggaagttatcattagcaggttctgtacaatgt |
194825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 125370 - 125322
Alignment:
| Q |
234 |
tattgtcacttttagcaggaagttatcattagaaggttctgcacaatgt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || ||||||| |
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| T |
125370 |
tattgtcacttttagcaggaagttatcattagtaggttttgtacaatgt |
125322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 125477 - 125448
Alignment:
| Q |
85 |
tttgtgagagtccataggttgtataatcat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
125477 |
tttgtgagagtccataggttgtataatcat |
125448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 512
Target Start/End: Complemental strand, 13602592 - 13602094
Alignment:
| Q |
11 |
cacagagagcgaatacttgaaggttgtgttgagcaagggcacctagtcagctaataacctatatgtgctcatagtttgtgagagtccataggttgtataa |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13602592 |
cacagagagtgaatacttgaaggttgtgttgagcaagggcacctagtcagctaataacctatatgtgctcatagtttgtgagagtccataggttgtataa |
13602493 |
T |
|
| Q |
111 |
tcatttagataagattgggagaaaaactgagaaaccgatcatcaatattgtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattcccta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13602492 |
tcatttagataagattgggagaaaaactgagaaaccgatcatcaat---gtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattcccta |
13602396 |
T |
|
| Q |
211 |
tatttgtcctgttgttgagttcttattgtcacttttagcaggaagttatcattagaaggttctgcacaatgtgagaaagtacaaaagaacatggaagtag |
310 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
13602395 |
tatttgtcctgttgttcagttcttattgtcgcttttagcaggaagttatcattagcaggttctgcacaatgtgaaaaagtacaaaagaacatggaactag |
13602296 |
T |
|
| Q |
311 |
tcaatttattgtttttctgaagaagatatatgataaggaaattttgcgtagaggagattgatgcttcccaacggttcaggtgtcagaggattcgcttcct |
410 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13602295 |
tcaatttattgtttttctgaagaagatatatgataaggaaattttgcatagaggagattgatgcttcccaacggttcaggtgtcagaggattcgcttcct |
13602196 |
T |
|
| Q |
411 |
tccatggaactagagggattgggttctgccactgcctcgttagaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataag |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13602195 |
tccatggaactagagggattgggttctgccactgcctcgttagaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataag |
13602096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 23833625 - 23833668
Alignment:
| Q |
12 |
acagagagcgaatacttgaaggttgtgttgagcaagggcaccta |
55 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
23833625 |
acagagagtgaatacttgaaggttgtgttgagcaagggaaccta |
23833668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 13487606 - 13487572
Alignment:
| Q |
232 |
cttattgtcacttttagcaggaagttatcattaga |
266 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
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| T |
13487606 |
cttattgtcacttttaacaggaagttatcattaga |
13487572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 4800005 - 4800041
Alignment:
| Q |
12 |
acagagagcgaatacttgaaggttgtgttgagcaagg |
48 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
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| T |
4800005 |
acagagagtgaatacttgaaggttgtgttgagcaagg |
4800041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 4800047 - 4800084
Alignment:
| Q |
24 |
tacttgaaggttgtgttgagcaagggcacctagtcagc |
61 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
4800047 |
tacttgaaggttgtgttgagcaagggaacctaatcagc |
4800084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 21770196 - 21770132
Alignment:
| Q |
234 |
tattgtcacttttagcaggaagttatcattagaaggttctgcacaatgtgagaaagtacaaaaga |
298 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||| |||||||| ||||||| | || |||||||||| |
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|
| T |
21770196 |
tattctcactattaccaggaagttatcattagcaggttctgtacaatgtaaaaacgtacaaaaga |
21770132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 21770303 - 21770274
Alignment:
| Q |
85 |
tttgtgagagtccataggttgtataatcat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
21770303 |
tttgtgagagtccataggttgtataatcat |
21770274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 114
Target Start/End: Original strand, 17805 - 17845
Alignment:
| Q |
75 |
gtgctcatagtttgt-gagagtccataggttgtataatcat |
114 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
17805 |
gtgctcatagtttgttgacagtccataggttgtataatcat |
17845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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