View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13724_low_1 (Length: 1760)

Name: NF13724_low_1
Description: NF13724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13724_low_1
NF13724_low_1
[»] chr2 (21 HSPs)
chr2 (280-619)||(18013460-18013799)
chr2 (1090-1358)||(18013797-18014063)
chr2 (18-176)||(18013200-18013358)
chr2 (1586-1665)||(30006621-30006700)
chr2 (1586-1665)||(30063309-30063388)
chr2 (1589-1665)||(15988179-15988255)
chr2 (1589-1637)||(43819441-43819489)
chr2 (1591-1641)||(7209092-7209142)
chr2 (1596-1641)||(7748204-7748249)
chr2 (1588-1656)||(13250308-13250376)
chr2 (1589-1673)||(19571008-19571092)
chr2 (1594-1685)||(37812519-37812611)
chr2 (1594-1673)||(40149037-40149116)
chr2 (1590-1641)||(11099669-11099720)
chr2 (897-940)||(33013460-33013503)
chr2 (1589-1664)||(38629807-38629882)
chr2 (1628-1685)||(37812289-37812347)
chr2 (1692-1725)||(21383645-21383678)
chr2 (1589-1642)||(30001979-30002032)
chr2 (1628-1665)||(37840342-37840379)
chr2 (1588-1641)||(38580876-38580929)
[»] chr1 (16 HSPs)
chr1 (1094-1277)||(31908914-31909094)
chr1 (1589-1664)||(12376480-12376555)
chr1 (1591-1665)||(49142921-49142995)
chr1 (1589-1673)||(52907350-52907434)
chr1 (1589-1664)||(12325339-12325414)
chr1 (1586-1663)||(49316189-49316266)
chr1 (1628-1725)||(4112751-4112850)
chr1 (1612-1665)||(42351902-42351955)
chr1 (1588-1665)||(49868450-49868527)
chr1 (1623-1725)||(369635-369739)
chr1 (1588-1660)||(26229533-26229605)
chr1 (1623-1673)||(31004471-31004521)
chr1 (1612-1665)||(10991815-10991868)
chr1 (1605-1642)||(19622475-19622512)
chr1 (1628-1665)||(26347010-26347047)
chr1 (1623-1672)||(31181548-31181597)
[»] chr5 (8 HSPs)
chr5 (1589-1643)||(27903382-27903436)
chr5 (1589-1685)||(11682227-11682325)
chr5 (1609-1673)||(16707059-16707123)
chr5 (1588-1665)||(25436166-25436243)
chr5 (1692-1744)||(41666949-41667001)
chr5 (1588-1685)||(17899481-17899579)
chr5 (1628-1673)||(37782084-37782129)
chr5 (1589-1642)||(42490575-42490628)
[»] scaffold0194 (1 HSPs)
scaffold0194 (858-935)||(6604-6681)
[»] chr8 (12 HSPs)
chr8 (1589-1673)||(10614973-10615057)
chr8 (1589-1665)||(31079604-31079680)
chr8 (1589-1672)||(8466759-8466842)
chr8 (1602-1672)||(12289204-12289274)
chr8 (1589-1685)||(7729907-7730004)
chr8 (1690-1744)||(38476112-38476166)
chr8 (1589-1642)||(10615596-10615649)
chr8 (1589-1644)||(8715617-8715672)
chr8 (1589-1643)||(8716317-8716371)
chr8 (1628-1673)||(5675768-5675813)
chr8 (1588-1645)||(6462924-6462981)
chr8 (1628-1673)||(29099774-29099819)
[»] chr3 (16 HSPs)
chr3 (1589-1665)||(13574963-13575039)
chr3 (1617-1673)||(31317460-31317516)
chr3 (1692-1744)||(16239667-16239719)
chr3 (1588-1664)||(30179751-30179827)
chr3 (895-933)||(20648875-20648913)
chr3 (1589-1635)||(26916362-26916408)
chr3 (1589-1663)||(41915137-41915211)
chr3 (1602-1667)||(8487553-8487617)
chr3 (1594-1643)||(21387326-21387375)
chr3 (1697-1745)||(31150924-31150972)
chr3 (1589-1665)||(45828212-45828288)
chr3 (1591-1642)||(27484890-27484941)
chr3 (1589-1643)||(50052830-50052884)
chr3 (1589-1663)||(50930668-50930742)
chr3 (1628-1673)||(3975392-3975437)
chr3 (1692-1725)||(39620168-39620201)
[»] scaffold0041 (2 HSPs)
scaffold0041 (1597-1672)||(67252-67327)
scaffold0041 (1594-1673)||(67456-67535)
[»] chr7 (19 HSPs)
chr7 (1597-1672)||(40898957-40899032)
chr7 (1605-1643)||(10420916-10420954)
chr7 (1593-1642)||(19065094-19065143)
chr7 (1591-1643)||(10420714-10420766)
chr7 (1589-1673)||(21213075-21213159)
chr7 (1603-1665)||(2937947-2938009)
chr7 (1690-1744)||(26239872-26239926)
chr7 (1589-1663)||(47849537-47849611)
chr7 (1589-1670)||(8125443-8125524)
chr7 (1589-1637)||(2600609-2600657)
chr7 (1589-1665)||(23794398-23794474)
chr7 (1589-1664)||(24612763-24612838)
chr7 (1594-1665)||(31892358-31892429)
chr7 (1594-1673)||(40898749-40898828)
chr7 (1628-1673)||(3392987-3393032)
chr7 (1594-1679)||(4507136-4507221)
chr7 (1589-1642)||(11473326-11473379)
chr7 (1594-1663)||(35308190-35308259)
chr7 (1589-1641)||(47849758-47849808)
[»] chr4 (14 HSPs)
chr4 (1589-1695)||(18981532-18981634)
chr4 (1594-1722)||(20726803-20726937)
chr4 (1589-1665)||(12005511-12005587)
chr4 (1589-1641)||(31943329-31943381)
chr4 (1589-1639)||(8904535-8904585)
chr4 (1591-1663)||(21041319-21041391)
chr4 (1625-1665)||(33107872-33107912)
chr4 (1692-1744)||(35788735-35788787)
chr4 (1594-1665)||(6218410-6218481)
chr4 (1588-1643)||(21393309-21393364)
chr4 (1587-1642)||(23209806-23209860)
chr4 (1591-1642)||(33108075-33108126)
chr4 (1603-1673)||(26030293-26030362)
chr4 (1588-1641)||(30971690-30971743)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1589-1642)||(41270-41323)
[»] chr6 (14 HSPs)
chr6 (1588-1672)||(3823269-3823353)
chr6 (1589-1679)||(30711244-30711336)
chr6 (1594-1673)||(12329978-12330057)
chr6 (1589-1639)||(27993473-27993523)
chr6 (852-934)||(35036483-35036565)
chr6 (1589-1673)||(20830715-20830800)
chr6 (1692-1744)||(9705096-9705148)
chr6 (1588-1643)||(2297676-2297731)
chr6 (1592-1643)||(12319738-12319789)
chr6 (1588-1643)||(31996877-31996932)
chr6 (1628-1685)||(3921800-3921858)
chr6 (1589-1643)||(30392668-30392722)
chr6 (1692-1725)||(4868788-4868821)
chr6 (1588-1640)||(34847061-34847111)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1591-1665)||(102184-102258)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1628-1665)||(14308-14345)


Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 280 - 619
Target Start/End: Original strand, 18013460 - 18013799
Alignment:
Q  280 acataaagttaatggtgtataaaacaaaaatggaataaagaaacttgtatatgataaggaagattttagaattgctcgaacaatgaagctcactaaggac 379  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  18013460 acataaagttaatggtctataaaacaaaaatggaataaagaaacttgtatatgataaggaagattttagaattgctcgaacaaagaagctcaccaaggac 18013559  T
Q  380 cattttgtatgcaaatcgagtaaacttgcaattaaatatcaaaatttcaattatacaaatataactatacactgaatcatgcaaataaacttatcaatca 479  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18013560 cattttgtatgcaaatcgagtaaacttgcaattaaataccaaaatttcaattatacaaatataattatacactgaatcatgcaaataaacttatcaatca 18013659  T
Q  480 caaaaatttcctagacatagcagtttaacaaatgtaagcaactgaagacaaaatttccacatgaaagttctattcaatatcttcaacgtgcaaagtaaaa 579  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  18013660 caaaaaattcctagacgtagcagtttaacaaatgtaagcaactgaagaaaaaatttccgcatgaaagttctattcaatatcttcaaagtgcaaagtaaaa 18013759  T
Q  580 gaaatagacgacctacaaacttgaaatagaacacaacaca 619  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18013760 gaaatagacgacctacaaacttgaaatagaacacaacaca 18013799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1090 - 1358
Target Start/End: Original strand, 18013797 - 18014063
Alignment:
Q  1090 acaagatgtcttctttcaaactcaattggtatatcactcaaaaaggagtttcttagctcatgatataaaggttctattgtgactgatgcagagtaatttg 1189  Q
    ||||||| ||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18013797 acaagatatcttctttcaaactcaattggtat--cattcaaaaaggagtttcttagctcatgatataaaggttctattgtgactgatgcagagtaatttg 18013894  T
Q  1190 taaaacataacaatccacttcataatatcacaaaataatgttaaagtaatataaaatttcacaactttcgagtatcataaaactataagctaactttcca 1289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  18013895 taaaacataacaatccacttcataatatcacaaaataatgttaaagtaatataaaattacacaacttttgagtatcataaaactataagctaactttcca 18013994  T
Q  1290 atgcaactggcttcactcataaatgagttatatagctcaagctataagaatttcatttcggctgtgtca 1358  Q
    |||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||| ||||| |||||    
T  18013995 atgcaactggcttcgctcatatatgagttatatagctcaagttataagaattttattccggctatgtca 18014063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-81
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 18013200 - 18013358
Alignment:
Q  18 ctttatacatggtttcgtcaattttcaaataataccaatttcctatcttcagaaaaacatcctttagtaatgtagcgaagatatgataaggctataaact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18013200 ctttatacatggtttcgtcaattttcaaataataccaatttcctatcttcagaaaaacatcctttagtaatgtagcgaagatatgataaggctataaact 18013299  T
Q  118 tttgagaaaaaagtttcatacctgtctgattcatttatgatatgttagtagaaatgatg 176  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18013300 tttgagaaaaaagtttcatagctgtctgattcatttatgatatgttagtagaaatgatg 18013358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1586 - 1665
Target Start/End: Complemental strand, 30006700 - 30006621
Alignment:
Q  1586 atttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    ||||||| ||||||||||| ||  | |||||||| ||||||||||||||||||||||| || |||||||||| |||||||    
T  30006700 atttgttgaagagtctcacgtcgaacaaaatatggcatgaacatgtgtttataagtggggataatcatcaccacacaagc 30006621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 1586 - 1665
Target Start/End: Complemental strand, 30063388 - 30063309
Alignment:
Q  1586 atttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    ||||||| |||| |||||| ||  | |||||||| ||||||||||||||||||||||| || |||||||||| |||||||    
T  30063388 atttgtttaagattctcacgtcgaacaaaatatggcatgaacatgtgtttataagtggggataatcatcaccacacaagc 30063309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1589 - 1665
Target Start/End: Original strand, 15988179 - 15988255
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    |||| ||||||| ||||||||| |||||||| | || |||||| ||||||||||| | ||||| |||||||||||||    
T  15988179 tgtttaagagtcccacatcagacaaaatatggcctgtacatgtttttataagtgggggaaatcctcacctcacaagc 15988255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1589 - 1637
Target Start/End: Complemental strand, 43819489 - 43819441
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttat 1637  Q
    |||||||||||||||||||||| |||| || ||||||||||||||||||    
T  43819489 tgttaaagagtctcacatcagacaaaaaataacatgaacatgtgtttat 43819441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1591 - 1641
Target Start/End: Complemental strand, 7209142 - 7209092
Alignment:
Q  1591 ttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagt 1641  Q
    |||||||||||||||||||| ||||||  |||||||||||| |||||||||    
T  7209142 ttaaagagtctcacatcagacaaaatacaacatgaacatgtatttataagt 7209092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1596 - 1641
Target Start/End: Original strand, 7748204 - 7748249
Alignment:
Q  1596 gagtctcacatcagataaaatatgacatgaacatgtgtttataagt 1641  Q
    ||||||||||||||| ||||||||||||  ||||||||||||||||    
T  7748204 gagtctcacatcagacaaaatatgacatagacatgtgtttataagt 7748249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1588 - 1656
Target Start/End: Complemental strand, 13250376 - 13250308
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcac 1656  Q
    |||||||||||||||||||||||||||| ||    ||||||||||||||||| || ||| |||| ||||    
T  13250376 ttgttaaagagtctcacatcagataaaagattgtttgaacatgtgtttataaatgcagacaatcctcac 13250308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1589 - 1673
Target Start/End: Complemental strand, 19571092 - 19571008
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    ||||||||||||||||||| || |||  ||||  ||||||||||||||||||||| |  |||| |||||||| |||  |||||||    
T  19571092 tgttaaagagtctcacatcggacaaataatgaactgaacatgtgtttataagtgggggcaatcctcacctcataagtcgattttg 19571008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1594 - 1685
Target Start/End: Complemental strand, 37812611 - 37812519
Alignment:
Q  1594 aagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg-aaggatgagtta 1685  Q
    ||||||| |||||| ||||| | ||||| |||  |||||||||||||||| |  |||| ||||||||||||  ||||||| ||||||||||||    
T  37812611 aagagtcccacatcggataagacatgacctgacaatgtgtttataagtgggggcaatcctcacctcacaagtcgattttgtaaggatgagtta 37812519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1594 - 1673
Target Start/End: Complemental strand, 40149116 - 40149037
Alignment:
Q  1594 aagagtctcacatcagataaaatatgacatgaaca-tgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    |||||||||||||| |||| || ||||| | |||| ||||||||||||||| || |||| ||||||||||||| |||||||    
T  40149116 aagagtctcacatcggatagaagatgacct-aacagtgtgtttataagtggggacaatcctcacctcacaagccgattttg 40149037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1590 - 1641
Target Start/End: Complemental strand, 11099720 - 11099669
Alignment:
Q  1590 gttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagt 1641  Q
    |||||||||||||||||||||||| | ||||| |||  ||||||||||||||    
T  11099720 gttaaagagtctcacatcagataagagatgacctgacaatgtgtttataagt 11099669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 897 - 940
Target Start/End: Original strand, 33013460 - 33013503
Alignment:
Q  897 agcatctgaagaccacgtcagcagctgaagactctgacctgttt 940  Q
    ||||||||||||||| || |||||||||||||||||||| ||||    
T  33013460 agcatctgaagaccatgttagcagctgaagactctgaccagttt 33013503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1589 - 1664
Target Start/End: Original strand, 38629807 - 38629882
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaag 1664  Q
    ||||||||||||||||||| ||||| | |||||||||  |||| ||||||||| | || |||| ||| ||||||||    
T  38629807 tgttaaagagtctcacatcggataagaaatgacatgacaatgtatttataagttgggacaatcctcatctcacaag 38629882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1628 - 1685
Target Start/End: Complemental strand, 37812347 - 37812289
Alignment:
Q  1628 atgtgtttataagtggagaaaatcatcacctcacaagctgattttg-aaggatgagtta 1685  Q
    |||||||||||||||| || |||| ||||||||||||  ||||||| ||||||||||||    
T  37812347 atgtgtttataagtggggacaatcctcacctcacaagtcgattttgtaaggatgagtta 37812289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1692 - 1725
Target Start/End: Complemental strand, 21383678 - 21383645
Alignment:
Q  1692 atttctaagatggcatcagagcctcctccaagat 1725  Q
    ||||||||||||| ||||||||||||||||||||    
T  21383678 atttctaagatggtatcagagcctcctccaagat 21383645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1589 - 1642
Target Start/End: Original strand, 30001979 - 30002032
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtg 1642  Q
    |||||||||||||||||| |||||| |||||| ||||||||   ||||||||||    
T  30001979 tgttaaagagtctcacataagataagatatgatatgaacataaatttataagtg 30002032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1628 - 1665
Target Start/End: Original strand, 37840342 - 37840379
Alignment:
Q  1628 atgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  37840342 atgtgtttataagtggaggcaatcatcacctcacaagc 37840379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1588 - 1641
Target Start/End: Original strand, 38580876 - 38580929
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagt 1641  Q
    |||||||||||| ||||||| ||||||| ||||| |||| | ||||||||||||    
T  38580876 ttgttaaagagtttcacatcggataaaaaatgacttgaatacgtgtttataagt 38580929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 8e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 8e-28
Query Start/End: Original strand, 1094 - 1277
Target Start/End: Original strand, 31908914 - 31909094
Alignment:
Q  1094 gatgtcttctttcaaactcaattggtatatcactcaaaaaggagtttcttagctcatgatataaaggttctattgtgactgatgcagagtaatttgtaaa 1193  Q
    |||||||  |||||||| |||||||| |  |||||||||||||||| || | |||| |||| | |||||||||||||||||||||| | ||| ||| |||    
T  31908914 gatgtctgttttcaaacacaattggttt--cactcaaaaaggagttact-atctcaagatacagaggttctattgtgactgatgcacattaacttgcaaa 31909010  T
Q  1194 acataacaatccacttcataatatcacaaaataatgttaaagtaatataaaatttcacaactttcgagtatcataaaactataa 1277  Q
    ||| |||||| || |||||||| | || |||||||||  || |||||||||||| |||||||||| |||||||||| |||||||    
T  31909011 acagaacaattcatttcataatgttacgaaataatgtacaaataatataaaattacacaactttcaagtatcataatactataa 31909094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1589 - 1664
Target Start/End: Complemental strand, 12376555 - 12376480
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaag 1664  Q
    |||||||||||||||||||| | |||| ||||||||||||||||||||||||||| |  |||| |||| |||||||    
T  12376555 tgttaaagagtctcacatcaaacaaaagatgacatgaacatgtgtttataagtgggggcaatcttcacttcacaag 12376480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1591 - 1665
Target Start/End: Original strand, 49142921 - 49142995
Alignment:
Q  1591 ttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    |||||||||| ||||||||| |||||||| ||||||||||||||||||||||| |  |||| ||| |||||||||    
T  49142921 ttaaagagtcccacatcagacaaaatatggcatgaacatgtgtttataagtgggggcaatcctcagctcacaagc 49142995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1589 - 1673
Target Start/End: Original strand, 52907350 - 52907434
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    ||||||| |||| |||||| |||||||||||   ||||||||||||||||||||| |  |||| ||||||||||||||| |||||    
T  52907350 tgttaaatagtcccacatcggataaaatatggtttgaacatgtgtttataagtgggggcaatcctcacctcacaagctggttttg 52907434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1589 - 1664
Target Start/End: Complemental strand, 12325414 - 12325339
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaag 1664  Q
    |||||||||||||||||||| | ||||  |||||| ||||||||||||||||||| |  |||| |||| |||||||    
T  12325414 tgttaaagagtctcacatcaaacaaaagctgacataaacatgtgtttataagtgggggcaatcttcacttcacaag 12325339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1586 - 1663
Target Start/End: Complemental strand, 49316266 - 49316189
Alignment:
Q  1586 atttgttaaagagtctcacatcagataaaa-tatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaa 1663  Q
    ||||||||||||||| ||||| ||| |||| |||| ||||||||||||||||||||||| || |||| ||| |||||||    
T  49316266 atttgttaaagagtc-cacattagaaaaaaatatggcatgaacatgtgtttataagtggggacaatcttcatctcacaa 49316189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1628 - 1725
Target Start/End: Complemental strand, 4112850 - 4112751
Alignment:
Q  1628 atgtgtttataagtggaga-aaatcatcacctcacaagctgattttgaaggatgagttatgct--caatttctaagatggcatcagagcctcctccaaga 1724  Q
    |||||||||||||||| |  ||||| ||||||||||| | | |||| |||||||||||| ||   ||||||||||||||| |||||||||| ||||||||    
T  4112850 atgtgtttataagtggggggaaatcctcacctcacaaaccggtttttaaggatgagttaggcctccaatttctaagatggtatcagagcct-ctccaaga 4112752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1612 - 1665
Target Start/End: Complemental strand, 42351955 - 42351902
Alignment:
Q  1612 aaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    |||||||| |||||||||||||||||||||||||   ||| |||||||||||||    
T  42351955 aaaatatggcatgaacatgtgtttataagtggaggccatcctcacctcacaagc 42351902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1588 - 1665
Target Start/End: Original strand, 49868450 - 49868527
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    ||||||||||||||  ||||  |||||| |||||||||| |||||| |||||||||||| ||| ||||| | ||||||    
T  49868450 ttgttaaagagtcttgcatcgaataaaaaatgacatgaatatgtgtatataagtggagacaataatcacattacaagc 49868527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1623 - 1725
Target Start/End: Original strand, 369635 - 369739
Alignment:
Q  1623 tgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg-aaggatgagttatgc-tcaatttctaagatggcatcagagcctcctcc 1720  Q
    |||| |||||||||||||||| |  |||| |||||| ||||| || ||||| ||||||||||||  | |||||||||| ||||| |||||||||| |||     
T  369635 tgaaaatgtgtttataagtgggggcaatcctcaccttacaagatggttttgtaaggatgagttagacctcaatttctaggatggtatcagagcctactct 369734  T
Q  1721 aagat 1725  Q
    |||||    
T  369735 aagat 369739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1588 - 1660
Target Start/End: Original strand, 26229533 - 26229605
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctca 1660  Q
    |||||| | |||| ||||||||| |||||||| | |||||||||||||||||||| ||  |||| ||||||||    
T  26229533 ttgttacatagtcccacatcagacaaaatatggcttgaacatgtgtttataagtgaaggcaatcctcacctca 26229605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1623 - 1673
Target Start/End: Complemental strand, 31004521 - 31004471
Alignment:
Q  1623 tgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    ||||||||||||||||||||| |  |||| ||||||||||||||| |||||    
T  31004521 tgaacatgtgtttataagtgggggcaatcctcacctcacaagctggttttg 31004471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1612 - 1665
Target Start/End: Complemental strand, 10991868 - 10991815
Alignment:
Q  1612 aaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    ||||| || |||||||||||||||||||||| ||  |||| |||||||||||||    
T  10991868 aaaatgtggcatgaacatgtgtttataagtgaaggcaatcctcacctcacaagc 10991815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1605 - 1642
Target Start/End: Original strand, 19622475 - 19622512
Alignment:
Q  1605 atcagataaaatatgacatgaacatgtgtttataagtg 1642  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  19622475 atcagataaaagatgatatgaacatgtgtttataagtg 19622512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1628 - 1665
Target Start/End: Complemental strand, 26347047 - 26347010
Alignment:
Q  1628 atgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  26347047 atgtgtttataagtggagacaatcctcacctcacaagc 26347010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1623 - 1672
Target Start/End: Complemental strand, 31181597 - 31181548
Alignment:
Q  1623 tgaacatgtgtttataagtggagaaaatcatcacctcacaagctgatttt 1672  Q
    ||||||||||||||||||||| |  |||| ||||||||||||||| ||||    
T  31181597 tgaacatgtgtttataagtgggggcaatcctcacctcacaagctggtttt 31181548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1589 - 1643
Target Start/End: Original strand, 27903382 - 27903436
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtgg 1643  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27903382 tgttaaagagtctcacatccgataaaatatgacatgaacatgtgtttataagtgg 27903436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-17
Query Start/End: Original strand, 1589 - 1685
Target Start/End: Complemental strand, 11682325 - 11682227
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggaga-aaatcatcacctcacaagctgattttg-aaggatgagtta 1685  Q
    |||||||||||||||||||||| |||||||||  |||| |||||||||||||| | || ||||| |||| |||||| ||||||||| ||||||||||||    
T  11682325 tgttaaagagtctcacatcagacaaaatatgatctgaaaatgtgtttataagtcgggacaaatcctcacatcacaatctgattttgcaaggatgagtta 11682227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1609 - 1673
Target Start/End: Complemental strand, 16707123 - 16707059
Alignment:
Q  1609 gataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    ||||||||||||| ||||||||||||||||||||| |  |||| | ||||||||||||| |||||    
T  16707123 gataaaatatgacctgaacatgtgtttataagtgggggcaatcctaacctcacaagctggttttg 16707059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1588 - 1665
Target Start/End: Original strand, 25436166 - 25436243
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    |||||||||| ||| |||||||| |||| ||| | |||||||||||||||||||   | ||||| |||||||||||||    
T  25436166 ttgttaaagattctgacatcagacaaaagatggcttgaacatgtgtttataagtaagggaaatcctcacctcacaagc 25436243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1692 - 1744
Target Start/End: Complemental strand, 41667001 - 41666949
Alignment:
Q  1692 atttctaagatggcatcagagcctcctccaagattcttttggccacttgctat 1744  Q
    ||||||||||||| |||||||||||||||||||| | || |||||| ||||||    
T  41667001 atttctaagatggtatcagagcctcctccaagatccgttgggccacctgctat 41666949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1588 - 1685
Target Start/End: Complemental strand, 17899579 - 17899481
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg-aaggatgagtta 1685  Q
    ||||| |||||||  ||||| || |||||||| | ||||||||||||||||||||| |  |||| ||||||||  ||| |||||||  |||||||||||    
T  17899579 ttgttgaagagtcatacatccgacaaaatatggcctgaacatgtgtttataagtgggggcaatcctcacctcatgagccgattttgtgaggatgagtta 17899481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1628 - 1673
Target Start/End: Complemental strand, 37782129 - 37782084
Alignment:
Q  1628 atgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    |||||||||||||||| |  |||||||||||||||||||| |||||    
T  37782129 atgtgtttataagtgggggcaatcatcacctcacaagctggttttg 37782084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1589 - 1642
Target Start/End: Original strand, 42490575 - 42490628
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtg 1642  Q
    ||||||||||||  |||||| | |||||||||||| ||||| ||||||||||||    
T  42490575 tgttaaagagtcatacatcaaacaaaatatgacataaacatatgtttataagtg 42490628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 50; Significance: 7e-19; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 858 - 935
Target Start/End: Original strand, 6604 - 6681
Alignment:
Q  858 tcagaagcatctgaaggaatgaagaatttgaaggcttcaagcatctgaagaccacgtcagcagctgaagactctgacc 935  Q
    |||||||||||||||||||||| || | |||||| ||||  |||||||| ||||||||||||||||||||||||||||    
T  6604 tcagaagcatctgaaggaatgaggactctgaaggattcatacatctgaataccacgtcagcagctgaagactctgacc 6681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1589 - 1673
Target Start/End: Complemental strand, 10615057 - 10614973
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||| || ||| |  |||| ||||||||||||| |||||||    
T  10615057 tgttaaagagtcccacatcggataaaatatgacatgaacatgtgtttacaaatgggggtaatcttcacctcacaagccgattttg 10614973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 1589 - 1665
Target Start/End: Complemental strand, 31079680 - 31079604
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    |||||||||||| |||||| | ||||||||| | |||||||||||||||||||||||  |||| |||||||||||||    
T  31079680 tgttaaagagtcccacatcgggtaaaatatggcttgaacatgtgtttataagtggaggcaatcctcacctcacaagc 31079604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1589 - 1672
Target Start/End: Complemental strand, 8466842 - 8466759
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgatttt 1672  Q
    ||||||||||||||||||| ||||| | ||| |||||||  |||||||||||||| || |||| ||||||||||||||| ||||    
T  8466842 tgttaaagagtctcacatcggataagagatggcatgaacgagtgtttataagtggggacaatcctcacctcacaagctggtttt 8466759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1602 - 1672
Target Start/End: Complemental strand, 12289274 - 12289204
Alignment:
Q  1602 cacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgatttt 1672  Q
    ||||||| | |||| |||| ||||||||||||||||||||||||  |||||||||||||||| || |||||    
T  12289274 cacatcaaacaaaagatgatatgaacatgtgtttataagtggaggtaatcatcacctcacaaactcatttt 12289204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1589 - 1685
Target Start/End: Original strand, 7729907 - 7730004
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg-aaggatgagtta 1685  Q
    |||||||||||| |||||||||||  | ||| | ||| ||||||||||||||||| |  |||| ||||||||||||| | ||||| ||||||||||||    
T  7729907 tgttaaagagtcccacatcagatatgagatggcctgaccatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtaaggatgagtta 7730004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1690 - 1744
Target Start/End: Original strand, 38476112 - 38476166
Alignment:
Q  1690 caatttctaagatggcatcagagcctcctccaagattcttttggccacttgctat 1744  Q
    ||||||||||||||| |||||||||||||||||||| | || |||||||| ||||    
T  38476112 caatttctaagatggtatcagagcctcctccaagatccattgggccacttactat 38476166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1589 - 1642
Target Start/End: Original strand, 10615596 - 10615649
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtg 1642  Q
    ||||||||||||  |||||  | |||||||||||||||||||||||||||||||    
T  10615596 tgttaaagagtcctacatcgaacaaaatatgacatgaacatgtgtttataagtg 10615649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1589 - 1644
Target Start/End: Original strand, 8715617 - 8715672
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtgga 1644  Q
    |||| ||||||| ||||| | |||||| || |||||||||||||||||||||||||    
T  8715617 tgttgaagagtcccacattaaataaaagataacatgaacatgtgtttataagtgga 8715672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1589 - 1643
Target Start/End: Original strand, 8716317 - 8716371
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtgg 1643  Q
    |||||||||| | ||| ||||| |||| |||||||||||||| ||||||||||||    
T  8716317 tgttaaagagacacacttcagacaaaagatgacatgaacatgagtttataagtgg 8716371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1628 - 1673
Target Start/End: Complemental strand, 5675813 - 5675768
Alignment:
Q  1628 atgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    |||||||||||||| |||| |||  |||||||||||||||||||||    
T  5675813 atgtgtttataagtagagacaattctcacctcacaagctgattttg 5675768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1588 - 1645
Target Start/End: Original strand, 6462924 - 6462981
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggag 1645  Q
    |||||||||||| ||||||| ||||| | ||||| |||  ||||||||||||||||||    
T  6462924 ttgttaaagagtttcacatcggataagagatgacttgacaatgtgtttataagtggag 6462981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1628 - 1673
Target Start/End: Complemental strand, 29099819 - 29099774
Alignment:
Q  1628 atgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    ||||||||||||||||||  |||| ||||||||||| |||||||||    
T  29099819 atgtgtttataagtggaggcaatcttcacctcacaaactgattttg 29099774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 7e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 1589 - 1665
Target Start/End: Complemental strand, 13575039 - 13574963
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    |||||||||||| |||||| || |||||||| |||| |||||||||||||||||| | ||||| |||||||||||||    
T  13575039 tgttaaagagtcccacatcggacaaaatatggcatggacatgtgtttataagtgggggaaatcctcacctcacaagc 13574963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1617 - 1673
Target Start/End: Original strand, 31317460 - 31317516
Alignment:
Q  1617 atgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||||| |||||||    
T  31317460 atgacatgacaatgtgtttataagtggggaaaatcatcacctcacaagccgattttg 31317516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1692 - 1744
Target Start/End: Original strand, 16239667 - 16239719
Alignment:
Q  1692 atttctaagatggcatcagagcctcctccaagattcttttggccacttgctat 1744  Q
    ||||||||||||| |||||||||||||||||||| | ||||||||| ||||||    
T  16239667 atttctaagatggtatcagagcctcctccaagatccgtttggccacctgctat 16239719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1588 - 1664
Target Start/End: Complemental strand, 30179827 - 30179751
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaag 1664  Q
    ||||||||||||| |||||||||||| | ||||| |||  |||||||||||||||| |  |||| ||||||||||||    
T  30179827 ttgttaaagagtcccacatcagataagagatgacctgacaatgtgtttataagtgggggtaatcctcacctcacaag 30179751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 895 - 933
Target Start/End: Complemental strand, 20648913 - 20648875
Alignment:
Q  895 caagcatctgaagaccacgtcagcagctgaagactctga 933  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  20648913 caagcatctgaagaccacgtcaacagctgaagactctga 20648875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1589 - 1635
Target Start/End: Original strand, 26916362 - 26916408
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgttt 1635  Q
    ||||||||||||||||| ||||||||| ||||||||||| |||||||    
T  26916362 tgttaaagagtctcacaacagataaaagatgacatgaacttgtgttt 26916408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1589 - 1663
Target Start/End: Original strand, 41915137 - 41915211
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaa 1663  Q
    |||||||||||| |||||  || || | ||||||||||||||||||||||||||| |  |||| |||||||||||    
T  41915137 tgttaaagagtcccacattggaaaagagatgacatgaacatgtgtttataagtgggggcaatcctcacctcacaa 41915211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1602 - 1667
Target Start/End: Complemental strand, 8487617 - 8487553
Alignment:
Q  1602 cacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctg 1667  Q
    ||||| ||| |||| ||| ||||||||||||||||||||||| || |||| |||||||||||||||    
T  8487617 cacatgagacaaaagatggcatgaacatgtgtttataagtgg-gacaatcctcacctcacaagctg 8487553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1594 - 1643
Target Start/End: Original strand, 21387326 - 21387375
Alignment:
Q  1594 aagagtctcacatcagataaaatatgacatgaacatgtgtttataagtgg 1643  Q
    ||||||| ||| |||||||||| ||||||||||||| |||||||||||||    
T  21387326 aagagtcccacttcagataaaagatgacatgaacatatgtttataagtgg 21387375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1697 - 1745
Target Start/End: Original strand, 31150924 - 31150972
Alignment:
Q  1697 taagatggcatcagagcctcctccaagattcttttggccacttgctatt 1745  Q
    |||||||| |||||||||||||||||||| | || ||||||||||||||    
T  31150924 taagatggtatcagagcctcctccaagatccgttgggccacttgctatt 31150972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1589 - 1665
Target Start/End: Original strand, 45828212 - 45828288
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    |||||||||||| |||||| || |||| ||| | ||||||||||||||||||||| |  ||||  ||||||||||||    
T  45828212 tgttaaagagtcccacatcggacaaaagatggcctgaacatgtgtttataagtgggggcaatctccacctcacaagc 45828288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1591 - 1642
Target Start/End: Complemental strand, 27484941 - 27484890
Alignment:
Q  1591 ttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtg 1642  Q
    ||||||||||||||||  ||||||| ||||  ||||||||||||||||||||    
T  27484941 ttaaagagtctcacattggataaaagatgagttgaacatgtgtttataagtg 27484890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1589 - 1643
Target Start/End: Complemental strand, 50052884 - 50052830
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtgg 1643  Q
    |||||||||||| |||||| || |||||||| | ||| |||||||||||||||||    
T  50052884 tgttaaagagtcccacatcggacaaaatatggcctgaccatgtgtttataagtgg 50052830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1589 - 1663
Target Start/End: Original strand, 50930668 - 50930742
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaa 1663  Q
    ||||||||| || |||||| ||||||| ||| | | ||||||||||||||||||| |  |||| |||||||||||    
T  50930668 tgttaaagactcccacatctgataaaagatggccttaacatgtgtttataagtgggggcaatcctcacctcacaa 50930742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1628 - 1673
Target Start/End: Complemental strand, 3975437 - 3975392
Alignment:
Q  1628 atgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    |||||||||||||||| || |||||||||||| ||||| |||||||    
T  3975437 atgtgtttataagtggggataatcatcacctctcaagccgattttg 3975392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1692 - 1725
Target Start/End: Original strand, 39620168 - 39620201
Alignment:
Q  1692 atttctaagatggcatcagagcctcctccaagat 1725  Q
    ||||||||||||| ||||||||||||||||||||    
T  39620168 atttctaagatggtatcagagcctcctccaagat 39620201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 44; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1597 - 1672
Target Start/End: Original strand, 67252 - 67327
Alignment:
Q  1597 agtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgatttt 1672  Q
    |||||| ||||| |||||||||||  ||||||||||||||||||||| |  |||||||||||||||||||| ||||    
T  67252 agtctcgcatcaaataaaatatgatctgaacatgtgtttataagtgggggcaatcatcacctcacaagctggtttt 67327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1594 - 1673
Target Start/End: Original strand, 67456 - 67535
Alignment:
Q  1594 aagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    |||||||| |||||| |||||| ||||||| || |||||||||||||||| |  |||| |||||| |||| | |||||||    
T  67456 aagagtcttacatcaaataaaagatgacataaatatgtgtttataagtgggggcaatcctcaccttacaaaccgattttg 67535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000003; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1597 - 1672
Target Start/End: Complemental strand, 40899032 - 40898957
Alignment:
Q  1597 agtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgatttt 1672  Q
    |||||| ||||| |||||||||||  ||||||||||||||||||||| |  |||||||||||||||||||| ||||    
T  40899032 agtctcgcatcaaataaaatatgatctgaacatgtgtttataagtgggggcaatcatcacctcacaagctggtttt 40898957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1605 - 1643
Target Start/End: Complemental strand, 10420954 - 10420916
Alignment:
Q  1605 atcagataaaatatgacatgaacatgtgtttataagtgg 1643  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10420954 atcagataaaatatgacatgaacatgtgtttataagtgg 10420916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1593 - 1642
Target Start/End: Original strand, 19065094 - 19065143
Alignment:
Q  1593 aaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtg 1642  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  19065094 aaagagtctcacatcagataaaatatgacttgaccatgtatttataagtg 19065143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1591 - 1643
Target Start/End: Complemental strand, 10420766 - 10420714
Alignment:
Q  1591 ttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtgg 1643  Q
    ||||||||||| |||||  | ||||||||||||||||||||||||||||||||    
T  10420766 ttaaagagtcttacatcgaaaaaaatatgacatgaacatgtgtttataagtgg 10420714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1589 - 1673
Target Start/End: Complemental strand, 21213159 - 21213075
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    ||||||||| || | |||||||||||| ||  |||||||||||||||||||||||    ||||||||||||||||| || |||||    
T  21213159 tgttaaagaatcccgcatcagataaaagattgcatgaacatgtgtttataagtgggagtaatcatcacctcacaagttggttttg 21213075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1603 - 1665
Target Start/End: Original strand, 2937947 - 2938009
Alignment:
Q  1603 acatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    ||||| ||||||||| ||| |||||||||||||||| ||||||| |||  |||||||||||||    
T  2937947 acatcggataaaatacgacttgaacatgtgtttatatgtggagacaatattcacctcacaagc 2938009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1690 - 1744
Target Start/End: Complemental strand, 26239926 - 26239872
Alignment:
Q  1690 caatttctaagatggcatcagagcctcctccaagattcttttggccacttgctat 1744  Q
    ||||||||||||||| |||||||||||||||||||| | || |||||| ||||||    
T  26239926 caatttctaagatggtatcagagcctcctccaagatccgttgggccacctgctat 26239872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1589 - 1663
Target Start/End: Original strand, 47849537 - 47849611
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaa 1663  Q
    |||||||||||  |||||| ||||||| ||| ||||||||||||||||||||| | |  |||| |||||||||||    
T  47849537 tgttaaagagtgccacatcggataaaagatggcatgaacatgtgtttataagttggggcaatcctcacctcacaa 47849611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1589 - 1670
Target Start/End: Complemental strand, 8125524 - 8125443
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgatt 1670  Q
    ||||||||||||  ||||||||||||| ||| |||||| |||||||||||| |||  |||||| | || |||||||| ||||    
T  8125524 tgttaaagagtccaacatcagataaaagatggcatgaatatgtgtttataaatgggaaaaatcctgacatcacaagccgatt 8125443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1589 - 1637
Target Start/End: Original strand, 2600609 - 2600657
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttat 1637  Q
    |||||||| |||||||||| || |||||||| |||||||||||||||||    
T  2600609 tgttaaagtgtctcacatcggagaaaatatggcatgaacatgtgtttat 2600657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1589 - 1665
Target Start/End: Complemental strand, 23794474 - 23794398
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    |||||||||||| ||||||| | |||| ||| ||||||||| ||||||||| ||| |  |||| |||||||||||||    
T  23794474 tgttaaagagtcacacatcaaacaaaagatgtcatgaacatttgtttataaatggtggcaatcctcacctcacaagc 23794398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1589 - 1664
Target Start/End: Original strand, 24612763 - 24612838
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaag 1664  Q
    ||||||||||||||||||| ||||||| ||   ||||| |||||||||||||||  ||  ||| ||||||||||||    
T  24612763 tgttaaagagtctcacatcggataaaagattgtatgaatatgtgtttataagtgaggactatcttcacctcacaag 24612838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1594 - 1665
Target Start/End: Original strand, 31892358 - 31892429
Alignment:
Q  1594 aagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    |||||||||||||| |||  || |||||||||  |||| ||||||||||| || |||| |||||||||||||    
T  31892358 aagagtctcacatcggatggaacatgacatgacaatgtatttataagtggggacaatcttcacctcacaagc 31892429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1594 - 1673
Target Start/End: Complemental strand, 40898828 - 40898749
Alignment:
Q  1594 aagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    |||||||| |||||| |||||| ||||||| || |||||||||||||||| |  |||| |||||| |||| | |||||||    
T  40898828 aagagtcttacatcaaataaaagatgacataaatatgtgtttataagtgggggcaatcctcaccttacaaaccgattttg 40898749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1628 - 1673
Target Start/End: Original strand, 3392987 - 3393032
Alignment:
Q  1628 atgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    |||||||||||||||| ||||||  ||||||||||||| |||||||    
T  3392987 atgtgtttataagtggggaaaattctcacctcacaagccgattttg 3393032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1594 - 1679
Target Start/End: Original strand, 4507136 - 4507221
Alignment:
Q  1594 aagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttgaaggat 1679  Q
    ||||||||||||||||||| || ||| | ||   || ||||||||||||| || |||| |||| |||||||||| ||||| |||||    
T  4507136 aagagtctcacatcagatacaagatggcctgctaatatgtttataagtggggacaatcttcacttcacaagctggttttgtaggat 4507221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1589 - 1642
Target Start/End: Original strand, 11473326 - 11473379
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtg 1642  Q
    |||||||||| |||| || | ||||||||| |||||||||| ||||||||||||    
T  11473326 tgttaaagagactcatattaaataaaatattacatgaacatatgtttataagtg 11473379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1594 - 1663
Target Start/End: Complemental strand, 35308259 - 35308190
Alignment:
Q  1594 aagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaa 1663  Q
    |||| ||||||||||||||  | ||| |||||  |||||||||||||||| |  ||||||||||||||||    
T  35308259 aagaatctcacatcagataggagatgtcatgacaatgtgtttataagtgggggcaatcatcacctcacaa 35308190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1589 - 1641
Target Start/End: Original strand, 47849758 - 47849808
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagt 1641  Q
    |||||||||||| |||||| ||||||| |||||||||||  ||||||||||||    
T  47849758 tgttaaagagtcccacatcggataaaagatgacatgaac--gtgtttataagt 47849808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.00000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1589 - 1695
Target Start/End: Complemental strand, 18981634 - 18981532
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg-aaggatgagttatg 1687  Q
    ||||||||||| |||||||| |||||| || |||||||||||||||||||||||||    |||  |||||||||||  | ||||| ||||||||||||||    
T  18981634 tgttaaagagt-tcacatcaaataaaagataacatgaacatgtgtttataagtgga----atccccacctcacaagtcggttttgtaaggatgagttatg 18981540  T
Q  1688 ctcaattt 1695  Q
    ||||||||    
T  18981539 ctcaattt 18981532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1594 - 1722
Target Start/End: Complemental strand, 20726937 - 20726803
Alignment:
Q  1594 aagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaag-ctgattttgaaggatgagttatgctcaa 1692  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||||||| |  |||| |||||||  ||| | | |||  |||||||||||| || |||    
T  20726937 aagagtctcacatcaaacaaaagatgacatgaacatgtgtttataagtgggggcaatcctcacctccaaagtcagttttataaggatgagttaggcccaa 20726838  T
Q  1693 t-----ttctaagatggcatcagagcctcctccaa 1722  Q
    |      |||||||||| |||||||||||||||||    
T  20726837 tataaaatctaagatggtatcagagcctcctccaa 20726803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1589 - 1665
Target Start/End: Complemental strand, 12005587 - 12005511
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    |||||||||||| |||||| || |||||||| ||||||||| |||| |||||||| |  |||| |||||||||||||    
T  12005587 tgttaaagagtcccacatcggacaaaatatggcatgaacatttgttaataagtgggggcaatcctcacctcacaagc 12005511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1589 - 1641
Target Start/End: Original strand, 31943329 - 31943381
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagt 1641  Q
    ||||||||||||| || ||||||||||||  ||||||||||||||||||||||    
T  31943329 tgttaaagagtcttacctcagataaaataaaacatgaacatgtgtttataagt 31943381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1589 - 1639
Target Start/End: Complemental strand, 8904585 - 8904535
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataa 1639  Q
    ||||| |||||||||||||||| |||| ||||||||||||| |||||||||    
T  8904585 tgttagagagtctcacatcagacaaaagatgacatgaacatttgtttataa 8904535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1591 - 1663
Target Start/End: Original strand, 21041319 - 21041391
Alignment:
Q  1591 ttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaa 1663  Q
    |||||||||| |||||| || |||| ||| |   ||||||||||||||||||| ||||||| |||||||||||    
T  21041319 ttaaagagtcccacatcggacaaaagatggccaaaacatgtgtttataagtggggaaaatcctcacctcacaa 21041391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1625 - 1665
Target Start/End: Original strand, 33107872 - 33107912
Alignment:
Q  1625 aacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  33107872 aacatgtgtttataagtggagacaatcttcacctcacaagc 33107912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1692 - 1744
Target Start/End: Original strand, 35788735 - 35788787
Alignment:
Q  1692 atttctaagatggcatcagagcctcctccaagattcttttggccacttgctat 1744  Q
    ||||||||||||| |||||||||||||||||||| | || |||||| ||||||    
T  35788735 atttctaagatggtatcagagcctcctccaagatccgttgggccacctgctat 35788787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1594 - 1665
Target Start/End: Original strand, 6218410 - 6218481
Alignment:
Q  1594 aagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    |||||||||||||||||||  | ||||| | |  |||||||||||||||| |  ||||||||||||||||||    
T  6218410 aagagtctcacatcagataggagatgacctaacaatgtgtttataagtgggggcaatcatcacctcacaagc 6218481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1588 - 1643
Target Start/End: Original strand, 21393309 - 21393364
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtgg 1643  Q
    ||||| || ||||||||| ||||||||||||||| ||||||||||  |||||||||    
T  21393309 ttgttgaatagtctcacaacagataaaatatgacttgaacatgtgcatataagtgg 21393364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1587 - 1642
Target Start/End: Original strand, 23209806 - 23209860
Alignment:
Q  1587 tttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtg 1642  Q
    ||||||||||||||| | ||| || |||||||||| ||||||||||||||||||||    
T  23209806 tttgttaaagagtcttatatcggacaaaatatgac-tgaacatgtgtttataagtg 23209860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1591 - 1642
Target Start/End: Original strand, 33108075 - 33108126
Alignment:
Q  1591 ttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtg 1642  Q
    ||||||||||| |||||  | |||||||||||| ||||||||||||||||||    
T  33108075 ttaaagagtcttacatcgaacaaaatatgacataaacatgtgtttataagtg 33108126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1603 - 1673
Target Start/End: Original strand, 26030293 - 26030362
Alignment:
Q  1603 acatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    ||||| ||||||||||| ||||||||||||||||||| ||| || |||| |||| ||| ||| ||||||||    
T  26030293 acatcggataaaatatggcatgaacatgtgtttataaatgg-gacaatcctcacttcataagttgattttg 26030362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1588 - 1641
Target Start/End: Original strand, 30971690 - 30971743
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagt 1641  Q
    ||||||| ||||||||||||| |||||||||||| | || || |||||||||||    
T  30971690 ttgttaatgagtctcacatcaaataaaatatgacttaaatatatgtttataagt 30971743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 42; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1589 - 1642
Target Start/End: Complemental strand, 41323 - 41270
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtg 1642  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  41323 tgttaaagagcctcacatcagacaaaagatgacatgaacatgtgtttataagtg 41270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1588 - 1672
Target Start/End: Original strand, 3823269 - 3823353
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgatttt 1672  Q
    |||||||||||||||||||| ||||| | ||||| |||  || ||||||||||||| || ||||||||| |||||| ||||||||    
T  3823269 ttgttaaagagtctcacatcggataagagatgacctgataatttgtttataagtggggacaatcatcacatcacaaactgatttt 3823353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1589 - 1679
Target Start/End: Complemental strand, 30711336 - 30711244
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaa--tatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttgaaggat 1679  Q
    |||||||||||   |||||||| ||||  |||| ||||||||||||||||||||| |||| |||| ||||||||||| | ||||||| |||||    
T  30711336 tgttaaagagttctacatcagacaaaagatatgtcatgaacatgtgtttataagtagagacaatcctcacctcacaaaccgattttgtaggat 30711244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1594 - 1673
Target Start/End: Complemental strand, 12330057 - 12329978
Alignment:
Q  1594 aagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    ||||||| |||||| ||||| |||||| || |  |||||||||||||||| |  |||| |||||||||||||||||||||    
T  12330057 aagagtcccacatcggataagatatgatataacaatgtgtttataagtgggggcaatcctcacctcacaagctgattttg 12329978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1589 - 1639
Target Start/End: Complemental strand, 27993523 - 27993473
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataa 1639  Q
    |||||||||||||||||| ||| |||||||| |||| ||||||||||||||    
T  27993523 tgttaaagagtctcacattagacaaaatatggcatggacatgtgtttataa 27993473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 852 - 934
Target Start/End: Complemental strand, 35036565 - 35036483
Alignment:
Q  852 tttcgttcagaagcatctgaaggaatgaagaatttgaaggcttcaagcatctgaagaccacgtcagcagctgaagactctgac 934  Q
    ||||||| ||||||||||||||||||||||| | | ||| | | | |||| |||||||||| ||||||  |||||||||||||    
T  35036565 tttcgtttagaagcatctgaaggaatgaagactctaaagacattatgcatttgaagaccacatcagcatatgaagactctgac 35036483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1589 - 1673
Target Start/End: Original strand, 20830715 - 20830800
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgttt-ataagtggagaaaatcatcacctcacaagctgattttg 1673  Q
    ||||||||||||| ||||| || |||| ||||  | ||||||||||| |||||||| |  |||||||||||||||| |||||||||    
T  20830715 tgttaaagagtcttacatcggacaaaagatgatctaaacatgtgttttataagtgggggcaatcatcacctcacaaactgattttg 20830800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1692 - 1744
Target Start/End: Original strand, 9705096 - 9705148
Alignment:
Q  1692 atttctaagatggcatcagagcctcctccaagattcttttggccacttgctat 1744  Q
    ||||||||||||| |||||||||||||||||||||  || |||||| ||||||    
T  9705096 atttctaagatggtatcagagcctcctccaagatttgttgggccacctgctat 9705148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1588 - 1643
Target Start/End: Original strand, 2297676 - 2297731
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtgg 1643  Q
    ||||| |||||||||||||| || ||||||||| ||||  ||||||||||||||||    
T  2297676 ttgttgaagagtctcacatcggacaaaatatgatatgagtatgtgtttataagtgg 2297731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1592 - 1643
Target Start/End: Complemental strand, 12319789 - 12319738
Alignment:
Q  1592 taaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtgg 1643  Q
    ||||||||||||||| |||||| | |||||||||  ||||||||||||||||    
T  12319789 taaagagtctcacattagataagagatgacatgacaatgtgtttataagtgg 12319738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1588 - 1643
Target Start/End: Complemental strand, 31996932 - 31996877
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtgg 1643  Q
    ||||||||||||| |||||  ||||||| ||| ||||| |||||||||||||||||    
T  31996932 ttgttaaagagtcacacataggataaaagatgtcatgaccatgtgtttataagtgg 31996877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1628 - 1685
Target Start/End: Original strand, 3921800 - 3921858
Alignment:
Q  1628 atgtgtttataagtggagaaaatcatcacctcacaagctgattttg-aaggatgagtta 1685  Q
    |||||||||||||||| ||||||| |||| ||| ||||||||| || ||||||||||||    
T  3921800 atgtgtttataagtggggaaaatcctcacgtcataagctgattctgtaaggatgagtta 3921858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1589 - 1643
Target Start/End: Original strand, 30392668 - 30392722
Alignment:
Q  1589 tgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtgg 1643  Q
    ||||||| ||||||||| || | |||| || ||||||||||||||||||||||||    
T  30392668 tgttaaaaagtctcacaacacacaaaagataacatgaacatgtgtttataagtgg 30392722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1692 - 1725
Target Start/End: Complemental strand, 4868821 - 4868788
Alignment:
Q  1692 atttctaagatggcatcagagcctcctccaagat 1725  Q
    ||||||||||||| ||||||||||||||||||||    
T  4868821 atttctaagatggtatcagagcctcctccaagat 4868788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1588 - 1640
Target Start/End: Complemental strand, 34847111 - 34847061
Alignment:
Q  1588 ttgttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataag 1640  Q
    ||||||||||||||||  | ||||||||| || ||||||||||||||||||||    
T  34847111 ttgttaaagagtctca--tgagataaaatgtggcatgaacatgtgtttataag 34847061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1591 - 1665
Target Start/End: Complemental strand, 102258 - 102184
Alignment:
Q  1591 ttaaagagtctcacatcagataaaatatgacatgaacatgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    ||||||||| ||||| |||| ||||||| || | ||||||||||||||||||| |  ||||  ||||||||||||    
T  102258 ttaaagagtttcacagcagacaaaatattacctaaacatgtgtttataagtgggggcaatcgccacctcacaagc 102184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1628 - 1665
Target Start/End: Original strand, 14308 - 14345
Alignment:
Q  1628 atgtgtttataagtggagaaaatcatcacctcacaagc 1665  Q
    |||||||||||||||| || ||||||||||||||||||    
T  14308 atgtgtttataagtggggacaatcatcacctcacaagc 14345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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