View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13724_low_10 (Length: 345)
Name: NF13724_low_10
Description: NF13724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13724_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 52543161 - 52542831
Alignment:
| Q |
1 |
aggtagagtggtggaagagtttgagatggaacttccaattccaccttacctttttgcatttgcagttggggagcttgataacagggaggtggggcccagg |
100 |
Q |
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| T |
52543161 |
aggtagagtggtggaagagtttgagatggaacttccaattccaccttacctttttgcatttgcagttggggagcttgataacagggaggtggggcccagg |
52543062 |
T |
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| Q |
101 |
actagggtttatgctgaatctgtgactcaactgttggattcagctgctaaagagtttgatggaactgaggatatgattagggaaggggaaagattgtttg |
200 |
Q |
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| T |
52543061 |
actagggtttatgctgaagctgtgactcaactgttggattcagctgctaaagagtttgatggaactgaggatatgattagggaaggggaaagattgtttg |
52542962 |
T |
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| Q |
201 |
gaaattatgagtgggagagatttgatttgttggttttgccacctagttttccttatggtggtatggagaatcctaggatggtgttcttgaccccgacggt |
300 |
Q |
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| T |
52542961 |
gaaattatgagtgggagagatttgatttgttggttttgccacctagttttccttatggtggtatggagaatcctaggatggtgttcttgaccccaacagt |
52542862 |
T |
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| Q |
301 |
tattaaaggggatgcaactggtgcacaggtt |
331 |
Q |
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| T |
52542861 |
tattaaaggggatgcaactggtgcacaggtt |
52542831 |
T |
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