View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13724_low_11 (Length: 333)
Name: NF13724_low_11
Description: NF13724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13724_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 20 - 328
Target Start/End: Complemental strand, 974835 - 974527
Alignment:
| Q |
20 |
aggcgttgcatgctgaaagtgtaaaagcaaattataaacattgtgctgaagttgatacacaatgcaactccagttctaaagatatttcagatgtagctgt |
119 |
Q |
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| T |
974835 |
aggcgttgcatgctgaaagtgtaaaagcaaattataaacattgtgctgaagttgatacacaatgcaactccagttctaaagatatttcagatgtagctgt |
974736 |
T |
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| Q |
120 |
gtcagtttgttgagctcttattgttactacgttgtggccaacgtctgattgaaaggttcattcaattccgatatcataaaatttggcaatctatccacaa |
219 |
Q |
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| T |
974735 |
gtcagtttgttgagctcttattgttactacgttgtggccgacgtctgattgaaaggttcattcaattccgatatcataaaatttggcaatctatccacaa |
974636 |
T |
|
| Q |
220 |
actggtactggttatatcacttatcacgtcttatattcttaatttgtatttcttttgtgccaggagggatacatatttattttccagctaattataaata |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||| |
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| T |
974635 |
actggtactggttatatcacttatcacgtcttatattcttaatttgtatttcttttgcgcgaggagggatacatatttatttttcagctaattataaatc |
974536 |
T |
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| Q |
320 |
ttcttggag |
328 |
Q |
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|| |||||| |
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| T |
974535 |
ttgttggag |
974527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 24 - 311
Target Start/End: Complemental strand, 8533199 - 8532915
Alignment:
| Q |
24 |
gttgcatgctgaaagtgtaaaagcaaattataaacattgtgctgaagttgatacacaatgcaactccagttctaaagatatttcagatgtagctgtgtca |
123 |
Q |
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||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
8533199 |
gttgcatactgaaaatgtaaaagcaaattctaaacattgtgctgaagttgatacagaatgcaactccagttctgaagatatgtcagatgtagctgtgtca |
8533100 |
T |
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| Q |
124 |
gtttgttgagctcttattgttactacgttgtggccaacgtctgattgaaaggttcattcaattccgatatcataaaatttggcaatctatccacaaactg |
223 |
Q |
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||||||||||||||||||||||||| ||||| | | ||||| ||||| |||||||||||||| | ||||||||||| | |||| |||||||||||||| |
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| T |
8533099 |
gtttgttgagctcttattgttactatgttgtagtcgacgtccgattg-aaggttcattcaatccgtatatcataaaactcagcaagctatccacaaactg |
8533001 |
T |
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| Q |
224 |
gtactggttatatcacttatcacgtcttatattcttaatttgtatttcttttgtgccaggagggatacatat--ttattttccagctaat |
311 |
Q |
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||||| || |||||||||| | ||||| ||||||||||||||||| |||| || ||||||||||||||| ||||||||| |||||| |
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| T |
8533000 |
gtactagt--tatcacttataatgtcttgtattcttaatttgtatt--ttttcagcaaggagggatacatattattattttccggctaat |
8532915 |
T |
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