View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13724_low_17 (Length: 228)
Name: NF13724_low_17
Description: NF13724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13724_low_17 |
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| [»] scaffold0280 (2 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 9500 - 9411
Alignment:
| Q |
26 |
aacactcacaacaaataacaaattaaacgacataactcaaatcacagctgtaaaatagtcatcattaatactactttagttaataataat |
115 |
Q |
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| T |
9500 |
aacactcacaacaaataacaaattaaacgacataactcaaatcacattagtaaaatagtcatcagtagtactcctttaattaataataat |
9411 |
T |
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Target: scaffold0280; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 9362 - 9334
Alignment:
| Q |
132 |
agacaccagacacgacactgacacaaact |
160 |
Q |
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| T |
9362 |
agacaccagacacgacactgacacaaact |
9334 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 21910305 - 21910236
Alignment:
| Q |
34 |
caacaaataacaaattaaacgacataactcaaatcacagctgtaaaatagtcatcattaatactacttta |
103 |
Q |
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| T |
21910305 |
caacaaataacaaatcaaacgacagaactgaaatcaaagtagtaaaatagtcgtcagtagtactacttta |
21910236 |
T |
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