View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13724_low_3 (Length: 766)

Name: NF13724_low_3
Description: NF13724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13724_low_3
NF13724_low_3
[»] chr7 (1 HSPs)
chr7 (36-747)||(7904897-7905601)


Alignment Details
Target: chr7 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 36 - 747
Target Start/End: Original strand, 7904897 - 7905601
Alignment:
Q  36 acatcatcaaagggaggtccatcatcaatgtggagacgacaagcataatcaagaggagtactaaccggtttacaagtggttaggcctgcatctgaaagta 135  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7904897 acatcatcaaagggaggtccatcatcaatgtgaagaagacaagcataatcaagaggagtactaaccgatttacaagtggttaggcctgcatctgaaagta 7904996  T
Q  136 agtcgaggcaatatttgcgttgacagagggatatacctttaaaccttttgaggaatgagcaacctccaagccaagaaagaacttgagctggccaaggtct 235  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  7904997 agtcgaggcaatatttgcgttgacagagggatatacct--------tttgaggaatgagcaacctccaagccaagaaagaacttgagctagcctaggtct 7905088  T
Q  236 ttgatacgaaaatgatgatcaagcaattgcttaatctcagcaaaagcagcaaggcagtcaccagccaatataatgtcattcacgtatattaataaagctg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7905089 ttgatacgaaaatgatgatcaagcaattgcttaatctcagcaaaagcagcaaggcagtcaccagccaatataatgtcattcacgtatattaataaagctg 7905188  T
Q  336 tgaaagaagttggagaagcacgaattaaaaaggagtgatcagctgaagcttgcacaaaaccaatggtcaggaggagtgaaataagcttttcaaaccaacg 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7905189 tgaaagaagttggagaagcacgaattaaaaaggagtgatcagctgaagcttgcacaaaaccaatggtcaggaggagtgaaataagcttttcaaaccaacg 7905288  T
Q  436 ccggctggcatgtttgaggccgtataaggacttgagcagcttacaaacctgcccaggcctaggaggagaaacaccttgaggagggtgcatgtagacatcc 535  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7905289 ccggctggcttgtttgaggccgtataaggacttgagcagcttacaaacctgcccaggcctaggaggagaaacaccttgaggagggtgcatgtagacatcc 7905388  T
Q  536 tcttgaagatcaccgtgcaagaaggcgttgttaacgtctaattggtggagatgccatcgttttatagaagcaacaacaagcaacaatcaaacagttgaca 635  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||    
T  7905389 tcttgaagatcaccgtgcaagaaggtgttgttagcgtctaattggtggagatgccatcgtttaatagaagtaacagcaagcaacaatcaaacaattgaca 7905488  T
Q  636 gtttttccaccagagagagtg-cnnnnnnnnntccacgccttcgatttgattgtaacccttggctacaagacgtgctctatagcgctcaatagaaccatt 734  Q
    ||||| |||||||||||||||           |||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  7905489 gttttgccaccagagagagtgtaaaaaaaaaatccacgccttcgatttgattgtaacccttggctacaagacatgcattatagcgctcaatagaaccatt 7905588  T
Q  735 ggcatgccgttta 747  Q
    ||||| |||||||    
T  7905589 ggcataccgttta 7905601  T

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