View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13724_low_4 (Length: 557)
Name: NF13724_low_4
Description: NF13724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13724_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 36449119 - 36449471
Alignment:
| Q |
18 |
gaaagtggacttgagaggggtgttgaggtgattggtgttttggcgaaatgcaaggaagggagggagcaattggagagttatggtggttgtgcgaagattt |
117 |
Q |
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| T |
36449119 |
gaaagtggacttgagaggggtgttgaggtgattggtgttttggcgaaatgcaaggaagggagggagcaattggagagttatggtggttgtgcgaagattt |
36449218 |
T |
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| Q |
118 |
tggtgagtgttttgaggaatggaagttcaagagggattcaatatgcattgttggcacttacttttgtttgtttgcatagcaaggaaatacttatgatgac |
217 |
Q |
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| T |
36449219 |
tggtgagtgttttgaggaatggaagttcaagagggattcaatatgcattgttggcacttactttggtttgtttgcatagcaaggaaatacttatgatgac |
36449318 |
T |
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| Q |
218 |
tctgcaagaaggggttttggaaatttgtattgggatggtagaggatgatagtgagaaagttaggagaaatgcgtctaatttgattcgggttcttcgcgga |
317 |
Q |
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| T |
36449319 |
tctgcaagaaggggttttggaaatttgtattgggatggtagaggataatagtgagaaagttaggagaaatgcgtctaatttgattcgggttcttcgcgga |
36449418 |
T |
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| Q |
318 |
ggaaaccaccaccggatcagttgatgatggaaaggaaagaaaaagaaatgaag |
370 |
Q |
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| T |
36449419 |
ggaaaccaccacaggatcagttgatgatggaaaggaaagaaaaagaaatgaag |
36449471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 434 - 542
Target Start/End: Original strand, 36449529 - 36449637
Alignment:
| Q |
434 |
gggtctgccttgttgggtgggtccattgtacaaaatgaaaagaagatcaaatttttgttgtgaatgtgtcaatgatagggttcttttgtatattgaataa |
533 |
Q |
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| T |
36449529 |
gggtctgccttgttgggtgggtccattgtacaaaatgaaaagaagatcaaatttttgttgtgaatgtgtcaatgatagggttcttttgtatattgaataa |
36449628 |
T |
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| Q |
534 |
tgatgatgt |
542 |
Q |
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| T |
36449629 |
tgatgatgt |
36449637 |
T |
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