View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13724_low_7 (Length: 451)
Name: NF13724_low_7
Description: NF13724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13724_low_7 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 451
Target Start/End: Original strand, 4346946 - 4347381
Alignment:
| Q |
17 |
gctagttggctcttcaatgtattcttataagtgtgtgcctatagagtttacttttcctttgatttaggagacaacagtattgcattaagtaaataaatgt |
116 |
Q |
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| T |
4346946 |
gctagttggctcttcaatgtattcttataagtgtgtgcctatagagtttacttttcctttgatttaggagacaacagtattgcattaagtaaataaatgt |
4347045 |
T |
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| Q |
117 |
caggcaagaactacattatcctgtcatatacatgccataggaaagaactattttgtttagcatgcatcttctttattgttgtgtcaggatgctcgcattg |
216 |
Q |
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| T |
4347046 |
caggcaaaaactacattatcctgtcatatacatgccataggaaagaactattttgtttagcatgcatcttttttattgttgtgtcaggatgctcgcattg |
4347145 |
T |
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| Q |
217 |
agaattgtcattcttttcctttctatttttgatttgtggaatttggttttgctggctagtgtaggagatt--tctttcttgtggtttgttccagaactgt |
314 |
Q |
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| T |
4347146 |
agaattgtcattcttttcctttctatttttgatttgtggaatttggttttgctggctagtgtaggagatttctctttcttgtagtttgttccagaactgt |
4347245 |
T |
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| Q |
315 |
ttaagagagacctgttcccttgatgttgaggatattggcttcttgcttgccgcacacattgtttcgttcaacttcttccctacttctgctggactggatt |
414 |
Q |
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| T |
4347246 |
ttaagagagacctgttcccttgatgttgaggatattggcttcttgcttgccgcatacattgtttcgttcaacttcttccctacttctgct-gactggatt |
4347344 |
T |
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| Q |
415 |
cgtcagccgcaggttttgcctgactaggtgatgcctc |
451 |
Q |
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| T |
4347345 |
actcagccgcaggttttgcctgactaggtgatgcctc |
4347381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 155 - 440
Target Start/End: Original strand, 4363510 - 4363798
Alignment:
| Q |
155 |
aggaaagaactattttgtttagcatgcatcttctttattgttgtgtcaggatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtg |
254 |
Q |
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| T |
4363510 |
aggaaagaactattttgtttagcatgcatctttttcattggtgtggcaggatgcttgcattgagaattgtcattcttttcctttctatttatgattggtg |
4363609 |
T |
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| Q |
255 |
gaatttggttttgctggctagtgtaggagattt--ctttcttgtggtttgttccagaactgtttaagagaga-cctgttcccttgatgttgaggatattg |
351 |
Q |
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| T |
4363610 |
tgatttggttttgctggctggtgtaggagatttccctttcttgttgttggttccagaactttttaagagagaccctgttcccttgatgttgaggatatga |
4363709 |
T |
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| Q |
352 |
gcttcttgcttgccgcacacattgtttcgttcaacttcttccctacttctgctggactggattcgtcagccgcaggttttgcctgacta |
440 |
Q |
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| T |
4363710 |
gcttcttgcttgctgcacatattgtttcgttcaacttcttccctactgcagctggactggattcgtcagccgctggttttgcctgacta |
4363798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 159 - 379
Target Start/End: Original strand, 4337992 - 4338215
Alignment:
| Q |
159 |
aagaactattttgtttagcatgcatcttctttattgttgtgtcaggatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtggaat |
258 |
Q |
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| T |
4337992 |
aagaattattttgtttaacatgcatattttttatcggtgtgccatgatgctcgcatcgagaattgccattctttttctttctaattttgattggtgaaaa |
4338091 |
T |
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| Q |
259 |
ttggttttgctggctagtgtaggagatttct--ttcttgtggtttgttccagaactgtttaagag-agacctgttcccttgatgttgaggatattggctt |
355 |
Q |
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| T |
4338092 |
ttggttccgcttgctgacatagagggtttctctttcttgtggtaggttccagaactgtttaagaggagacctgttcccttgatgttgagggtatgagcat |
4338191 |
T |
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| Q |
356 |
cttgcttgccgcacacattgtttc |
379 |
Q |
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| T |
4338192 |
ctggcttgccgcacacattgtttc |
4338215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 4121745 - 4121660
Alignment:
| Q |
204 |
gatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtggaatttggttttgctggctagtgtaggagatttct |
289 |
Q |
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| T |
4121745 |
gatgcttgcattgagaattgtcattcttttcatttctattttagatttgtggattttggttttgttggctaatgtaggagatttct |
4121660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 165 - 289
Target Start/End: Complemental strand, 4118801 - 4118677
Alignment:
| Q |
165 |
tattttgtttagcatgcatcttctttattgttgtgtcaggatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtggaatttggtt |
264 |
Q |
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| T |
4118801 |
tattttatttagcatgcatattttttattgatgtgccaagatgcttgcattaagatttgtcactcttttcctttctattttttatttatggaatttagtt |
4118702 |
T |
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| Q |
265 |
ttgctggctagtgtaggagatttct |
289 |
Q |
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||| ||| |||||||||||||||| |
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| T |
4118701 |
ttgttgggcagtgtaggagatttct |
4118677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 4131589 - 4131531
Alignment:
| Q |
212 |
cattgagaattgtcattcttttcctttctatttttgatttgtggaatttggttttgctg |
270 |
Q |
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| T |
4131589 |
cattgagaattgtcattcttttcctttctatttttgattggtggaatttggttttgctg |
4131531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 4363463 - 4363521
Alignment:
| Q |
71 |
tcctttgatttaggagacaacagtattgcattaagtaaataaatgtcaggcaagaacta |
129 |
Q |
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| T |
4363463 |
tcctttgatgtaggagacaacaatattgcattaagtaaataaatgtcaggaaagaacta |
4363521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 4131463 - 4131397
Alignment:
| Q |
366 |
gcacacattgtttcgttcaacttcttccctacttctgctggactggattcgtcagccgcaggttttg |
432 |
Q |
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| T |
4131463 |
gcacacattgtttcgttcaacttcttccctacgaaagctggtctggattcgccgaccgcaggttttg |
4131397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 4363376 - 4363432
Alignment:
| Q |
18 |
ctagttggctcttcaatgtattcttataagtgtgtgcctatagagtttacttttcctt |
75 |
Q |
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| T |
4363376 |
ctagtttgatctttaatgtattcttata-gtgtgtgcgtatagagtttagttttcctt |
4363432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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