View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_high_11 (Length: 323)
Name: NF13725_high_11
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 30139450 - 30139160
Alignment:
| Q |
14 |
agatgaatgaatcagatttttatgatgtagaattggtaaggaacaagcttgaagaattacgacatcgcagacaagaggggtgtcttagagatattatatt |
113 |
Q |
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| T |
30139450 |
agatgaatgaatcagatttttatgatgtagaattggtaaggaacaagcttgaagaattacgacatcgcagacaagaggggtgtcttagagatattatatt |
30139351 |
T |
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| Q |
114 |
ttgtatgagagctgatcttattagaaatctaggtaatatgtgtaaccctgagcttcataaaggtaggcttcatgtgcctagacagattaaggagtatatt |
213 |
Q |
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| T |
30139350 |
ttgtatgagagctgatcttattagaaatctaggtaatatgtgtaaccctgagcttcataaaggtaggcttcatgtgcctagacagattaaggagtatatt |
30139251 |
T |
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| Q |
214 |
gatgaggtttccactcagttgagaatggtttgtcattctgatacggaggaacttgcgttggaagaaaagcttgctttcatgcatgaaacta |
304 |
Q |
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| T |
30139250 |
gatgaggtttccactcagttgagaatggtttgtcattctgatacggaggaacttgcgttggaagaaaagcttgctttcatgcatgaaacta |
30139160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 39129227 - 39129516
Alignment:
| Q |
15 |
gatgaatgaatcagatttttatgatgtagaattggtaaggaacaagcttgaagaattacgacatcgcagacaagaggggtgtcttagagatattatattt |
114 |
Q |
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|||||||||||| |||||||| |||||||||||||| ||||| ||| || |||| ||||||||||| ||||||||||||| ||||||||||||||| ||| |
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| T |
39129227 |
gatgaatgaatccgatttttacgatgtagaattggttaggaataaggttcaagagttacgacatcgtagacaagaggggtctcttagagatattatcttt |
39129326 |
T |
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| Q |
115 |
tgtatgagagctgatcttattagaaatctaggtaatatgtgtaaccctgagcttcataaaggtaggcttcatgtgcctagacagattaaggagtatattg |
214 |
Q |
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| T |
39129327 |
tgtatgagagctgatcttgttagaaatttaggtaatatgtgtaaccctcagcttcataaaggtaggcttcatgtgccgagacagattaaggagtatattg |
39129426 |
T |
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| Q |
215 |
atgaggtttccactcagttgagaatggtttgtcattctgatacggaggaacttgcgttggaagaaaagcttgctttcatgcatgaaacta |
304 |
Q |
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||||||| | | ||||||||||||||||||||||||||| | ||||| ||| | |||||||||||||||||||||||||||||||||| |
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| T |
39129427 |
atgaggtggcgatgcagttgagaatggtttgtcattctgattccgaggagctttctttggaagaaaagcttgctttcatgcatgaaacta |
39129516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 35605684 - 35605396
Alignment:
| Q |
14 |
agatgaatgaatcagatttttatgatgtagaattggtaaggaacaagcttgaagaattacgacatcgcagacaagaggggtgtcttagagatattatatt |
113 |
Q |
| |
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||||||| ||||||||| ||||||| || |||||||| ||||||||||| |||| | || || |||||||||||| ||||||||||||||| || |
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| T |
35605684 |
agatgaacgaatcagatctttatgacgttgaattggttgggaacaagcttcaagagcttcgtagccgtcgacaagaggggtctcttagagatattatgtt |
35605585 |
T |
|
| Q |
114 |
ttgtatgagagctgatcttattagaaatctaggtaatatgtgtaaccctgagcttcataaaggtaggcttcatgtgcctagacagattaaggagtatatt |
213 |
Q |
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||||||| | ||||||||| || ||||| ||||||||||||||||||| || || || || ||||||||||| || |||| || |||||||| || |
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| T |
35605584 |
ttgtatgcgtgctgatcttgttcgaaatttaggtaatatgtgtaacccggaactacacaagggtaggcttcaagtccctaagttaatcaaggagtacctt |
35605485 |
T |
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| Q |
214 |
gatgaggtttccactcagttgagaatggtttgtcattctgatacggaggaacttgcgttggaagaaaagcttgctttcatgcatgaaac |
302 |
Q |
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|||||||| | || || ||||||||||||||| | || || ||||||| | | ||||||||||||||||| |||||||||||||| |
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| T |
35605484 |
gatgaggtaacgacgcaattgagaatggtttgtgactcgaattcggaggagttatcattggaagaaaagcttgcgttcatgcatgaaac |
35605396 |
T |
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