View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_high_16 (Length: 245)
Name: NF13725_high_16
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 84 - 229
Target Start/End: Original strand, 42116202 - 42116348
Alignment:
| Q |
84 |
tagatttaatttgctttgtgttctacnnnnnnn-tattattcatgttgagtgtattagtaacacttgtttgttgtatgataaagaattgatgtaaatttt |
182 |
Q |
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| T |
42116202 |
tagatttaatttgctttgtgttctacaaaaaaaatattatttatgttgagtgtattagtaacacttgtatgttgtatgataaagaattgatgtaaatttt |
42116301 |
T |
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| Q |
183 |
gatttacggagaagctaaggtaacatgatcataatacatggaatatt |
229 |
Q |
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| T |
42116302 |
gatttacggagaagctaaggtaacatgatcataatacatggaatatt |
42116348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 42116135 - 42116169
Alignment:
| Q |
17 |
acaaaataatgtccattcttcaaggaggggttttt |
51 |
Q |
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| T |
42116135 |
acaaaataatgtccattcttcaaggaggggttttt |
42116169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 32007611 - 32007675
Alignment:
| Q |
126 |
tgttgagtgtattagtaacacttgtttgttgtatgataaagaattgatgtaaattttgatttacg |
190 |
Q |
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| T |
32007611 |
tgttgagtgtattagcaacacttgtctgttgtatgataaagaattgatgtaaattttgatttacg |
32007675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 32007458 - 32007486
Alignment:
| Q |
17 |
acaaaataatgtccattcttcaaggaggg |
45 |
Q |
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| T |
32007458 |
acaaaataatgtccattcttcaaggaggg |
32007486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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