View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13725_high_17 (Length: 242)

Name: NF13725_high_17
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13725_high_17
NF13725_high_17
[»] chr2 (2 HSPs)
chr2 (134-230)||(32707907-32708003)
chr2 (28-66)||(32707801-32707839)
[»] chr5 (1 HSPs)
chr5 (141-195)||(16959622-16959676)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 32707907 - 32708003
Alignment:
Q  134 aacaagatcttcaagctcataaaggttcctcgccctcaccaacaccgcaaaaaaggaatgatatatagttcaaaccaaatatagttcaacacaggtt 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32707907 aacaagatcttcaagctcataaaggttcctcgccctcaccaacaccgcaaaaaaggaatgatatatagttcaaaccaaatatagttcaacacaggtt 32708003  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 32707801 - 32707839
Alignment:
Q  28 acaaagtgaaaataagatggtattttctgtaataattag 66  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32707801 acaaagtgaaaataagatggtattttctgtaataattag 32707839  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 16959676 - 16959622
Alignment:
Q  141 tcttcaagctcataaaggttcctcgccctcaccaacaccgcaaaaaaggaatgat 195  Q
    |||| ||||||||||||||| || ||||||||||||||  |||||||||||||||    
T  16959676 tctttaagctcataaaggtttcttgccctcaccaacacaccaaaaaaggaatgat 16959622  T

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