View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_low_10 (Length: 357)
Name: NF13725_low_10
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 41547771 - 41547533
Alignment:
| Q |
17 |
ataaaaagtgttacaagagaaactgtacaatgattacgatttgagtagttaaaataaatacagagaaattagttgcaagggttttgataccttgtttctt |
116 |
Q |
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| T |
41547771 |
ataaaaagtgttacaagagaaaatgtacaatgattacgatttgagtagttaaaataaatacagagaaattagttgcaagggttttgataccttgtttctt |
41547672 |
T |
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| Q |
117 |
atgatttccattgccattttcctgaagagattagctgggccacatgaccacctgtgttgctgataacggtaggctttgaatgtacttggcaattcacttt |
216 |
Q |
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| T |
41547671 |
atgatttccattgccattttcctgaagagattagctgggccacatgaccacctgtgttgctgataacggtaggctttgaatgtacttggcaattcacttt |
41547572 |
T |
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| Q |
217 |
ttacctaaatttatttaaataatagatcatattgtaagt |
255 |
Q |
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| T |
41547571 |
ttacctaaatttatttaaataatagatcatattgtaagt |
41547533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 319
Target Start/End: Complemental strand, 41547509 - 41547474
Alignment:
| Q |
284 |
tttaggcctaactgttttgataattatttctgttaa |
319 |
Q |
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| T |
41547509 |
tttaggcctaactgttttgataattatttctgttaa |
41547474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 41165407 - 41165487
Alignment:
| Q |
143 |
gagattagctgggccacatgaccacctgtgttgctgataacggtaggctttgaatgtacttggcaattcactttttaccta |
223 |
Q |
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| T |
41165407 |
gagattagctggaccgcatgaccacctgtgctgctgatatctgtatgctttaaatgtacttggtagttcatttttgaccta |
41165487 |
T |
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