View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_low_11 (Length: 341)
Name: NF13725_low_11
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 25678791 - 25678531
Alignment:
| Q |
1 |
ccaaaggtaacccagtagttctagtccatttaactaataattaatatcatgtgtgtttattttccaagtatactattccaagctaatggttaaataatat |
100 |
Q |
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| T |
25678791 |
ccaaatgtaacccagtagttctagtccatttaactaataatg----tcatgtgtctttattttccaagtatactattccaagctaatggttaaataatat |
25678696 |
T |
|
| Q |
101 |
tctctagattcttagcgcatctaaataatgaaacaacaatattattaagaattaaagtaaaataatatataaggatgact--ttttaaggagaatgctaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25678695 |
tctctagattcttagcgcatctaaataatgaaacaacaatattattaagaattaaagtaaaataatatataaggatgactttttttaaggagaatgctaa |
25678596 |
T |
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| Q |
199 |
atagtgtctttaaagcatatataagtattcatttagttccatattagatgacatgtttgacattatg |
265 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||| |
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| T |
25678595 |
ata--gtctttaaagcatatataagtattcatttcattccatattagatgatatgtttgacaatatg |
25678531 |
T |
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