View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_low_13 (Length: 308)
Name: NF13725_low_13
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 146 - 293
Target Start/End: Complemental strand, 8283148 - 8283001
Alignment:
| Q |
146 |
gaacatgaaacatgtttgctaactctcatgtatagctgtatcttttacttacactgctcgtttttcacgcaagtttttgttctgcagagaaagtagtaac |
245 |
Q |
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| T |
8283148 |
gaacatgaaacatgtttgctaactctcatgtatagctgtatcttttacttacactgctcgtttttcacgcaagtttttgttctgcagagaaagtagtaac |
8283049 |
T |
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| Q |
246 |
aaaatgaattatataataaaaggataaataattgatcaggctatatat |
293 |
Q |
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| T |
8283048 |
aaaatgaattatataataaaaggataaataattgatcaggctatatat |
8283001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 8283292 - 8283189
Alignment:
| Q |
1 |
aataaagcagatactaactgaaatacataatacagtgtatgacataaaaacggaagataaaaggtcaatatttaatatttacagtataaaagtggacaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8283292 |
aataaagcagatactaactgaaatacataatacagtgtatgacataaaaacggaagataaaaggccaatatttaatatttacagtataaaagtggacaca |
8283193 |
T |
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| Q |
101 |
ttag |
104 |
Q |
| |
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|||| |
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| T |
8283192 |
ttag |
8283189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 34685705 - 34685653
Alignment:
| Q |
146 |
gaacatgaaacatgtttgctaactctcatgtatagctgtatcttttacttaca |
198 |
Q |
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||||||||| |||||||||||||| | |||||||||||| || ||||||||| |
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| T |
34685705 |
gaacatgaaccatgtttgctaactgttgtgtatagctgtagctcttacttaca |
34685653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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