View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_low_14 (Length: 285)
Name: NF13725_low_14
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 27516609 - 27516343
Alignment:
| Q |
1 |
cttgggtatatttgttaaaacataaaagtgatgtgtatgatgtgtttcgctcctttcatcaaatgatagttacacaatttaacacatgtataaaagtgat |
100 |
Q |
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| T |
27516609 |
cttgggtatatttgttaaaacataaaagtgatgtgtatgatgtgttttgctcctttcatcaaatgatagttacacaatttaacacatgtataaaagtgat |
27516510 |
T |
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| Q |
101 |
tagatctgacaatggaggggaatattttaaaaaggatttaatggagttcatgaactctaaaggcattttgcatcaaactacatgtccttactcaccccaa |
200 |
Q |
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| T |
27516509 |
tagatctgacaatggaagggaatattttaaaaaggaattaatggagttcatgaactctaaaggcattttgcatcaaactacatgtccttactcaccccaa |
27516410 |
T |
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| Q |
201 |
caaaatggagtggctgagaggaaaaatag-cacatattagaagtgacacgatcactcttaatagatg |
266 |
Q |
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| T |
27516409 |
caaaatggagtggctgagaggaaaaatagacacatattagaagtgacacgatcactcttaatagatg |
27516343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 52684336 - 52684278
Alignment:
| Q |
171 |
catcaaactacatgtccttactcaccccaacaaaatggagtggctgagaggaaaaatag |
229 |
Q |
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| T |
52684336 |
catcaaagtacatgtgttaactcaccccaacaaaatggaatagcggagaggaaaaatag |
52684278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 56392368 - 56392102
Alignment:
| Q |
1 |
cttgggtatatttgttaaaacataaaagtgatgtgtatgatgtgtttcgctcctttcatcaaatgatagttacacaatttaacacatgtataaaagtgat |
100 |
Q |
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| T |
56392368 |
cttgggtatatttgttaaaacataaaagtgatgtgtatgatgtgttttgctcctttcatcaaatgatagttacacaatttaacacatgtataaaagtgat |
56392269 |
T |
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| Q |
101 |
tagatctgacaatggaggggaatattttaaaaaggatttaatggagttcatgaactctaaaggcattttgcatcaaactacatgtccttactcaccccaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56392268 |
tagatctgacaatggaagggaatattttaaaaaggaattaatggagttcatgaactctaaaggcattttgcatcaaactacatgtccttactcaccccaa |
56392169 |
T |
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| Q |
201 |
caaaatggagtggctgagaggaaaaatag-cacatattagaagtgacacgatcactcttaatagatg |
266 |
Q |
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| T |
56392168 |
caaaatggagtggccgagaggaaaaatagacacatattagaagtgacacgatcactcttaatagatg |
56392102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 38 - 266
Target Start/End: Complemental strand, 40456311 - 40456082
Alignment:
| Q |
38 |
tgatgtgtttcgctcctttcatcaaatgatagttacacaatttaacacatgtataaaagtgattagatctgacaatggaggggaatattttaaaaaggat |
137 |
Q |
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|||||||||||| || ||| |||| ||||||| ||||||||||||| ||| ||||| || |||||||| ||||||||||||||||||||||||| || |
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| T |
40456311 |
tgatgtgtttcgttctttttatcagatgatagaaacacaatttaacatatgcataaaggtcattagatcagacaatggaggggaatattttaaaaccgaa |
40456212 |
T |
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| Q |
138 |
ttaatggagttcatgaactctaaaggcattttgcatcaaactacatgtccttactcaccccaacaaaatggagtggctgagaggaaaaatag-cacatat |
236 |
Q |
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|||| |||| | ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| || ||| |
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| T |
40456211 |
ttaacaaagtttttaaactctaaaggcattttgcatcaaactacatgtccatattcacctcaacaaaatggagtggctgagaggaaaaatagacatttat |
40456112 |
T |
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| Q |
237 |
tagaagtgacacgatcactcttaatagatg |
266 |
Q |
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|||| |||||| |||||||| ||||||||| |
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| T |
40456111 |
tagaggtgacaagatcactcctaatagatg |
40456082 |
T |
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