View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13725_low_16 (Length: 270)

Name: NF13725_low_16
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13725_low_16
NF13725_low_16
[»] chr3 (3 HSPs)
chr3 (20-198)||(3561464-3561642)
chr3 (170-254)||(3561642-3561726)
chr3 (20-58)||(3585039-3585077)
[»] chr8 (2 HSPs)
chr8 (66-159)||(31135213-31135306)
chr8 (158-252)||(31135044-31135136)
[»] chr4 (5 HSPs)
chr4 (65-159)||(35965747-35965841)
chr4 (66-159)||(49488632-49488725)
chr4 (158-254)||(49488759-49488856)
chr4 (66-150)||(52406452-52406536)
chr4 (169-251)||(52406309-52406391)
[»] chr5 (2 HSPs)
chr5 (66-159)||(37499967-37500059)
chr5 (66-159)||(19463392-19463484)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 3561464 - 3561642
Alignment:
Q  20 catgaaagatagcacaaatttgagattaagagaagcctacagctgtcagtggcggaggcatgtatagcatagtaggtgcacttgtctgcactaagttttg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  3561464 catgaaagatagcacaaatttgagattaagagaagcctacagctgtcagtggcggaggcatgtatagaatagtaggtgcacttgtctccactaagttttg 3561563  T
Q  120 ggaaattacttactactatatgtctatatgttaaaattttagaagtttttctattccactcacatagaacctggtacac 198  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3561564 ggaaattacttactaatatatgtttatatgttaaaattttagaagcttttctattccactcacatagaacctggtacac 3561642  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 3561642 - 3561726
Alignment:
Q  170 ctattccactcacatagaacctggtacacacacttttataattttaatcagacacttgtttttgtcttacgtgtagttgtctcac 254  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3561642 ctattccacccacatagaacctggtacacacactttcataattttaatcagacacttgtttttgtcttacttgtagttgtctcac 3561726  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 3585039 - 3585077
Alignment:
Q  20 catgaaagatagcacaaatttgagattaagagaagccta 58  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  3585039 catgaaagatagcacaaatttttgattaagagaagccta 3585077  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 31135306 - 31135213
Alignment:
Q  66 cagtggcggaggcatgtatagcatagtaggtgcacttgtctgcactaagttttgggaaattacttactactatatgtctatatgttaaaatttt 159  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||| |||||  |||||||||  |||||||||| |||||||| |||||||    
T  31135306 cagtggcggaggcatgtatagcatagtgggtgcacatgcctgcactaaattttgtaaaattacttggtactatatgtttatatgttgaaatttt 31135213  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 252
Target Start/End: Complemental strand, 31135136 - 31135044
Alignment:
Q  158 ttagaagtttttctattccactcacatagaacctggtacacacacttttataattttaatcagacacttgtttttgtcttacgtgtagttgtctc 252  Q
    ||||||| || | |||||||||||||| ||||  |||||||||||||| | ||||| ||||  ||| || ||||||||| || ||||||||||||    
T  31135136 ttagaagcttctatattccactcacatcgaacacggtacacacactttcacaatttcaatc--acatttatttttgtctcacttgtagttgtctc 31135044  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 35965747 - 35965841
Alignment:
Q  65 tcagtggcggaggcatgtatagcatagtaggtgcacttgtctgcactaagttttgggaaattacttactactatatgtctatatgttaaaatttt 159  Q
    |||| ||||||||||  || |||||||| ||||||| |||||||||||||||||| ||||||| ||| |||||||| | |||||||| |||||||    
T  35965747 tcaggggcggaggcacatagagcatagtgggtgcacatgtctgcactaagttttgtgaaattatttagtactatatatttatatgttgaaatttt 35965841  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 49488632 - 49488725
Alignment:
Q  66 cagtggcggaggcatgtatagcatagtaggtgcacttgtctgcactaagttttgggaaattacttactactatatgtctatatgttaaaatttt 159  Q
    |||||||||||||| ||| |||||| |||||||||  | |||||||||||||||  |||||| ||| |||||| ||| |||||||| |||||||    
T  49488632 cagtggcggaggcaagtaaagcataataggtgcacaagcctgcactaagttttgtaaaattatttagtactatctgtttatatgttgaaatttt 49488725  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 49488759 - 49488856
Alignment:
Q  158 ttagaagtttttctattccactcacatagaacctggtacacacacttttataattttaatcagacacttgttttt-gtcttacgtgtagttgtctcac 254  Q
    ||||||| || ||||||| ||||| ||||||| ||||| ||||||||| | ||||| ||||||| | |||||||| |||| || ||||||||||||||    
T  49488759 ttagaagcttctctattctactcaaatagaacatggtagacacactttcacaatttcaatcagatatttgttttttgtctcacttgtagttgtctcac 49488856  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 52406536 - 52406452
Alignment:
Q  66 cagtggcggaggcatgtatagcatagtaggtgcacttgtctgcactaagttttgggaaattacttactactatatgtctatatgt 150  Q
    |||||||||||||| |||||| ||||| ||||||| || || |||||||||||| | |||||||||  | ||||||| |||||||    
T  52406536 cagtggcggaggcaagtatagtatagtgggtgcacatgccttcactaagttttgtgtaattacttagcattatatgtttatatgt 52406452  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 52406391 - 52406309
Alignment:
Q  169 tctattccactcacatagaacctggtacacacacttttataattttaatcagacacttgtttttgtcttacgtgtagttgtct 251  Q
    ||||||| |||||||||||||  ||  |||||||||| | ||||| ||||| ||| || ||||||||| || |||||||||||    
T  52406391 tctattctactcacatagaacacggatcacacactttcacaatttcaatcacacatttatttttgtctcacttgtagttgtct 52406309  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 37500059 - 37499967
Alignment:
Q  66 cagtggcggaggcatgtatagcatagtaggtgcacttgtctgcactaagttttgggaaattacttactactatatgtctatatgttaaaatttt 159  Q
    |||||| |||||||||||||||||||| ||||||| || ||||||||| |||||  |||||| ||  |||||||||| |||||||| |||||||    
T  37500059 cagtggtggaggcatgtatagcatagtgggtgcacatgcctgcactaaattttgtaaaatta-ttggtactatatgtttatatgttgaaatttt 37499967  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 19463484 - 19463392
Alignment:
Q  66 cagtggcggaggcatgtatagcatagtaggtgcacttgtctgcactaagttttgggaaattacttactactatatgtctatatgttaaaatttt 159  Q
    ||||||| ||||||||||||||||||| | ||||| |  ||||||||| |||||  |||||| ||  |||||||||| |||||||| |||||||    
T  19463484 cagtggcagaggcatgtatagcatagtggatgcacatccctgcactaaattttgtaaaatta-ttggtactatatgtttatatgttgaaatttt 19463392  T

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