View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_low_17 (Length: 262)
Name: NF13725_low_17
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 38954589 - 38954832
Alignment:
| Q |
6 |
gtgagaagaatgatgtatttttgagtggactccttcaagagcaacgtagcaagaaagaacgtacaaataccatgatagatcatcttctaaacatgcaaga |
105 |
Q |
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| T |
38954589 |
gtgaaaagaatgatgtatttttgagtggactccttcaagagcaacgtagcaagaaagaacgtacaaataccatgatagatcatcttctaaacatgcaaga |
38954688 |
T |
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| Q |
106 |
atcacagccagagtactacaccgatacaatcatcaaaggcctttgtttggtaagtac---ataataattattgtttctattaatcgtacaaattattgtt |
202 |
Q |
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| T |
38954689 |
atcacagccagagtactacaccgatacaatcatcaaaggcctttgtttggtaagtacataataataattattgtttctattaatcgtacaaattatagtt |
38954788 |
T |
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| Q |
203 |
atataaccttagcttaatcttattttacacatttacatatatat |
246 |
Q |
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| T |
38954789 |
atataaccttagcttaatcttattttacacatttacatatatat |
38954832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 38975846 - 38975724
Alignment:
| Q |
26 |
ttgagtggactccttcaagagcaacgtagcaagaaagaacgtacaaataccatgatagatcatcttctaaacatgcaagaatcacagccagagtactaca |
125 |
Q |
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| T |
38975846 |
ttgagaggactcattcaagaacaacgcagcaaaaaccagcatacaaatactatgatagatcatcttctaagtttacaagaatcacaacctgagtactata |
38975747 |
T |
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| Q |
126 |
ccgatacaatcatcaaaggcctt |
148 |
Q |
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| T |
38975746 |
ctgatcaaatcatcaaaggcctt |
38975724 |
T |
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