View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13725_low_2 (Length: 478)

Name: NF13725_low_2
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13725_low_2
NF13725_low_2
[»] chr7 (3 HSPs)
chr7 (2-273)||(47333288-47333559)
chr7 (402-436)||(47333124-47333158)
chr7 (403-461)||(46290472-46290530)
[»] chr4 (5 HSPs)
chr4 (402-478)||(28440491-28440567)
chr4 (403-461)||(25052282-25052340)
chr4 (402-478)||(11671848-11671923)
chr4 (415-461)||(35106213-35106259)
chr4 (402-450)||(470125-470173)
[»] chr1 (2 HSPs)
chr1 (402-478)||(41131663-41131741)
chr1 (402-461)||(52860592-52860651)
[»] chr8 (4 HSPs)
chr8 (402-468)||(8747920-8747986)
chr8 (402-461)||(18754008-18754067)
chr8 (402-461)||(38783685-38783744)
chr8 (406-455)||(2116541-2116590)
[»] chr3 (1 HSPs)
chr3 (402-461)||(9821319-9821378)
[»] scaffold0385 (1 HSPs)
scaffold0385 (403-461)||(11840-11898)
[»] chr2 (2 HSPs)
chr2 (402-478)||(23478242-23478320)
chr2 (403-453)||(27337243-27337293)
[»] chr5 (1 HSPs)
chr5 (403-478)||(24905437-24905514)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 2 - 273
Target Start/End: Complemental strand, 47333559 - 47333288
Alignment:
Q  2 acttcatacttgttttttaattaatacgaataacaannnnnnn-acctctaaatcttaattaatatgaatacaannnnnnnnnnacctctaaaaaagtaa 100  Q
    |||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||| ||||||||          | ||||||||||||||    
T  47333559 acttcatatttgttttttaattaatacgaataacaattttttttacctctaaatcttaattaatacgaatacaatttttttt--atctctaaaaaagtaa 47333462  T
Q  101 ttttatttatgattaattgtaccaaggaaacacaatttattgctnnnnnnn-gaaacacaatttaaatatatannnnnnnagaaaataaaaatgattgtc 199  Q
    |||| |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||        ||||||||||||||||||||    
T  47333461 ttttctttatgattaattgtaccaaggaaacacaatttattgctaaaaaaaagaaacacaatttaaatatat-tttttttagaaaataaaaatgattgtc 47333363  T
Q  200 ttttannnnnnnn-cttcatgaaaaaagactcatggttgccggtaacaacaatgacaagttgttaattaacgtga 273  Q
    | ||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47333362 tcttgtttttttttcttcatgaaaaaagactcatggttgccggtaacaacaatgacaagttgttaattaacgtga 47333288  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 436
Target Start/End: Complemental strand, 47333158 - 47333124
Alignment:
Q  402 ataccaaacaactcatcaaatctatcatatttctc 436  Q
    |||||||||||||||||||||||||||||||||||    
T  47333158 ataccaaacaactcatcaaatctatcatatttctc 47333124  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 461
Target Start/End: Complemental strand, 46290530 - 46290472
Alignment:
Q  403 taccaaacaactcatcaaatctatcatatttctcacttgtttctctcttcttaaactct 461  Q
    ||||||||||  ||||||||||| |||||||||||  | |||||||||||| |||||||    
T  46290530 taccaaacaatccatcaaatctaccatatttctcatctctttctctcttctcaaactct 46290472  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 402 - 478
Target Start/End: Complemental strand, 28440567 - 28440491
Alignment:
Q  402 ataccaaacaactcatcaaatctatcatatttctcacttgtttctctcttcttaaactctttcacttatttctctct 478  Q
    |||||||||||| ||||||||||||| |||||||||| | |||||||||||| | ||||| ||||||||||||||||    
T  28440567 ataccaaacaacccatcaaatctatcttatttctcacctatttctctcttctcatactctctcacttatttctctct 28440491  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 461
Target Start/End: Original strand, 25052282 - 25052340
Alignment:
Q  403 taccaaacaactcatcaaatctatcatatttctcacttgtttctctcttcttaaactct 461  Q
    ||||||||||| |||||||||||   |||||||||||| |||||||||||||| |||||    
T  25052282 taccaaacaacccatcaaatctactttatttctcacttctttctctcttcttatactct 25052340  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 478
Target Start/End: Original strand, 11671848 - 11671923
Alignment:
Q  402 ataccaaacaactcatcaaatctatcatatttctcacttgtttctctcttcttaaactctttcacttatttctctct 478  Q
    ||||||||||| ||||||||||||   |||||||| ||| |||||||||||| ||||||| | || |||||||||||    
T  11671848 ataccaaacaattcatcaaatctactctatttctccctt-tttctctcttctcaaactctcttacctatttctctct 11671923  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 461
Target Start/End: Original strand, 35106213 - 35106259
Alignment:
Q  415 catcaaatctatcatatttctcacttgtttctctcttcttaaactct 461  Q
    ||||||||||||| |||||||||| | |||||||||||| |||||||    
T  35106213 catcaaatctatcttatttctcacatctttctctcttctcaaactct 35106259  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Original strand, 470125 - 470173
Alignment:
Q  402 ataccaaacaactcatcaaatctatcatatttctcacttgtttctctct 450  Q
    |||||||||||  ||||||||||||  |||||||||||| |||||||||    
T  470125 ataccaaacaatacatcaaatctattctatttctcacttctttctctct 470173  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 402 - 478
Target Start/End: Complemental strand, 41131741 - 41131663
Alignment:
Q  402 ataccaaacaactcatcaaatctatcatatttctcacttgtttctctcttcttaaa--ctctttcacttatttctctct 478  Q
    |||||||||||| ||||||||| ||| |||||||||||| |||||||||||| |||  |||| ||||||||||||||||    
T  41131741 ataccaaacaacccatcaaatccatcttatttctcacttatttctctcttctcaaactctctctcacttatttctctct 41131663  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 461
Target Start/End: Original strand, 52860592 - 52860651
Alignment:
Q  402 ataccaaacaactcatcaaatctatcatatttctcacttgtttctctcttcttaaactct 461  Q
    |||||||||||| |||||||||||  ||||||||||||| |||||||||||| |||||||    
T  52860592 ataccaaacaacccatcaaatctactatatttctcacttttttctctcttctcaaactct 52860651  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 468
Target Start/End: Complemental strand, 8747986 - 8747920
Alignment:
Q  402 ataccaaacaactcatcaaatctatcatatttctcacttgtttctctcttcttaaactctttcactt 468  Q
    |||||||||||| ||||||||| ||| |||||||||||| |||||||||||| ||||||| ||||||    
T  8747986 ataccaaacaacccatcaaatccatcttatttctcacttatttctctcttctcaaactctctcactt 8747920  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 461
Target Start/End: Complemental strand, 18754067 - 18754008
Alignment:
Q  402 ataccaaacaactcatcaaatctatcatatttctcacttgtttctctcttcttaaactct 461  Q
    |||||||||||  |||||||||||| |||||| |||| | |||||||||||||| |||||    
T  18754067 ataccaaacaatacatcaaatctattatatttttcacctttttctctcttcttatactct 18754008  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 461
Target Start/End: Original strand, 38783685 - 38783744
Alignment:
Q  402 ataccaaacaactcatcaaatctatcatatttctcacttgtttctctcttcttaaactct 461  Q
    ||||||||||| ||||||||||||  ||||||||||| | |||||||||| | |||||||    
T  38783685 ataccaaacaattcatcaaatctactatatttctcacatctttctctcttttcaaactct 38783744  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 455
Target Start/End: Original strand, 2116541 - 2116590
Alignment:
Q  406 caaacaactcatcaaatctatcatatttctcacttgtttctctcttctta 455  Q
    |||||||| |||||||||||  ||||||||||| | ||||||||||||||    
T  2116541 caaacaacacatcaaatctactatatttctcacatatttctctcttctta 2116590  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 402 - 461
Target Start/End: Complemental strand, 9821378 - 9821319
Alignment:
Q  402 ataccaaacaactcatcaaatctatcatatttctcacttgtttctctcttcttaaactct 461  Q
    |||||||||||| ||||||||  ||| |||||||||||| |||||||||||| |||||||    
T  9821378 ataccaaacaacccatcaaattcatcttatttctcacttatttctctcttctcaaactct 9821319  T

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Target: scaffold0385 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 461
Target Start/End: Original strand, 11840 - 11898
Alignment:
Q  403 taccaaacaactcatcaaatctatcatatttctcacttgtttctctcttcttaaactct 461  Q
    ||||||||||| |||||||||||   |||||||||||| |||||||||||||| |||||    
T  11840 taccaaacaacccatcaaatctactctatttctcacttctttctctcttcttatactct 11898  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 478
Target Start/End: Original strand, 23478242 - 23478320
Alignment:
Q  402 ataccaaacaactcatcaaatctatcatatttctcacttgtttctctcttcttaaa--ctctttcacttatttctctct 478  Q
    |||| ||||||| ||||||||  ||| |||||||||||| ||| |||||||| |||  |||| ||||||||||||||||    
T  23478242 atactaaacaacccatcaaattcatcttatttctcacttatttatctcttctcaaactctctctcacttatttctctct 23478320  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 27337293 - 27337243
Alignment:
Q  403 taccaaacaactcatcaaatctatcatatttctcacttgtttctctcttct 453  Q
    ||||||||||  ||||||||||||| |||||||||| | ||||||||||||    
T  27337293 taccaaacaatacatcaaatctatcctatttctcacatctttctctcttct 27337243  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 478
Target Start/End: Original strand, 24905437 - 24905514
Alignment:
Q  403 taccaaacaactcatcaaatctatcatatttctcacttgtttctctctt--cttaaactctttcacttatttctctct 478  Q
    ||||||||||  |||||||||||   |||||||||||| ||||||||||  || |  |||||||||||||||||||||    
T  24905437 taccaaacaatacatcaaatctactctatttctcacttctttctctcttcactaactctctttcacttatttctctct 24905514  T

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