View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13725_low_20 (Length: 241)

Name: NF13725_low_20
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13725_low_20
NF13725_low_20
[»] chr1 (3 HSPs)
chr1 (1-224)||(36729181-36729404)
chr1 (192-224)||(26049269-26049301)
chr1 (189-222)||(20063242-20063275)
[»] scaffold0007 (1 HSPs)
scaffold0007 (186-222)||(197675-197711)
[»] chr7 (1 HSPs)
chr7 (17-47)||(1912906-1912936)
[»] chr5 (2 HSPs)
chr5 (2-40)||(29401789-29401827)
chr5 (20-48)||(38415295-38415323)
[»] chr8 (1 HSPs)
chr8 (191-224)||(33545555-33545588)
[»] chr4 (2 HSPs)
chr4 (4-61)||(44295576-44295633)
chr4 (189-225)||(24778279-24778315)
[»] chr6 (1 HSPs)
chr6 (10-62)||(14774569-14774621)
[»] chr2 (1 HSPs)
chr2 (21-61)||(14368767-14368807)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 36729181 - 36729404
Alignment:
Q  1 cctgatcatgacgttagacctaacaattttgatatttttactagttgaattatgaattatgagtctatgtaatttaactttttaactaatacaattcatt 100  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  36729181 cctgatcatgacgttcgacttaacaattttgatatttttactagttgaattatgaattatgagactatgtaatttaactttttaactaatacagttcatt 36729280  T
Q  101 tctagcaagcctgactattagatcgcaccaaggaaatggttgtctaccaaaaagttcttgtgttaatttgtagaaaaataggtatatatctgttaatacc 200  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  36729281 tctagcatgcctgactattagatcgcgccaaggaaatgggtgtctaccaaaaagttcttgtgttaatttgtagaaaaataggtatttatatgttaatacc 36729380  T
Q  201 aaaaataaaatatttggtcgaaat 224  Q
    ||||||||||||||||||||||||    
T  36729381 aaaaataaaatatttggtcgaaat 36729404  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 26049269 - 26049301
Alignment:
Q  192 gttaataccaaaaataaaatatttggtcgaaat 224  Q
    |||||||||||||||||||||||||||||||||    
T  26049269 gttaataccaaaaataaaatatttggtcgaaat 26049301  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 20063275 - 20063242
Alignment:
Q  189 tctgttaataccaaaaataaaatatttggtcgaa 222  Q
    ||||||||||||||||||| ||||||||||||||    
T  20063275 tctgttaataccaaaaatataatatttggtcgaa 20063242  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 197675 - 197711
Alignment:
Q  186 atatctgttaataccaaaaataaaatatttggtcgaa 222  Q
    |||||||||||||||||||||||||||||||||||||    
T  197675 atatctgttaataccaaaaataaaatatttggtcgaa 197711  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 1912936 - 1912906
Alignment:
Q  17 gacctaacaattttgatatttttactagttg 47  Q
    |||||||||||||||||||||||||||||||    
T  1912936 gacctaacaattttgatatttttactagttg 1912906  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 29401827 - 29401789
Alignment:
Q  2 ctgatcatgacgttagacctaacaattttgatattttta 40  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  29401827 ctgatcatgacgtttgacctaacaatttcgatattttta 29401789  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 38415323 - 38415295
Alignment:
Q  20 ctaacaattttgatatttttactagttga 48  Q
    |||||||||||||||||||||||||||||    
T  38415323 ctaacaattttgatatttttactagttga 38415295  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 33545555 - 33545588
Alignment:
Q  191 tgttaataccaaaaataaaatatttggtcgaaat 224  Q
    |||||||||||||||||| |||||||||||||||    
T  33545555 tgttaataccaaaaataagatatttggtcgaaat 33545588  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 44295576 - 44295633
Alignment:
Q  4 gatcatgacgttagacctaacaattttgatatttttactagttgaattatgaattatg 61  Q
    |||||||||||   | |||||||||||||||||||||| ||||||| ||||| |||||    
T  44295576 gatcatgacgtctcatctaacaattttgatatttttacaagttgaactatgatttatg 44295633  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 24778315 - 24778279
Alignment:
Q  189 tctgttaataccaaaaataaaatatttggtcgaaatt 225  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  24778315 tctgttagtaccaaaaatgaaatatttggtcgaaatt 24778279  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 14774621 - 14774569
Alignment:
Q  10 gacgttagacctaacaattttgatatttttactagttgaattatgaattatga 62  Q
    |||||| |||||||||||||||  | ||||||||||||| |||||| ||||||    
T  14774621 gacgtttgacctaacaattttgccaattttactagttgagttatgacttatga 14774569  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 14368807 - 14368767
Alignment:
Q  21 taacaattttgatatttttactagttgaattatgaattatg 61  Q
    ||||||||||||||| |||| |||||||||||||| |||||    
T  14368807 taacaattttgatatatttattagttgaattatgagttatg 14368767  T

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