View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_low_23 (Length: 228)
Name: NF13725_low_23
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 62 - 213
Target Start/End: Original strand, 38613476 - 38613627
Alignment:
| Q |
62 |
taattcttactaaatatttcacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac |
161 |
Q |
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| T |
38613476 |
taattcttactaaatattccacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac |
38613575 |
T |
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| Q |
162 |
ttttatttatttttctatctcgtagcaagtttggccatcatcatcatctctg |
213 |
Q |
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| T |
38613576 |
ttttatttatttttctatctcgtaacaagtttggccatcatcatcttctctg |
38613627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 38612168 - 38612218
Alignment:
| Q |
20 |
gttatctcttgtatttttcctgtttagaaaatgatctgatgttaattctta |
70 |
Q |
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| T |
38612168 |
gttatctcttgtattttttctgtttagaaaatgatctgatgttaattctta |
38612218 |
T |
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