View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_low_3 (Length: 468)
Name: NF13725_low_3
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 60 - 306
Target Start/End: Original strand, 32707116 - 32707368
Alignment:
| Q |
60 |
ctactctactaacttgctccttgggtgtgctctcaaagttcttatcagcacttgctacctcaaaatcatccctcctatggaactctttaacttgtttctt |
159 |
Q |
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| T |
32707116 |
ctactctactaacttgctccttgggtgtgctctcaaagttcttatcagcacttgctacctcaaaatcatccctcctatggaactctttaacttgtttctt |
32707215 |
T |
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| Q |
160 |
tgattaaattaacaagt------aaccttgaatcattgtatgttttgattcacaatgagttctggaaaatcactgagctaagaagaatccatcaaatcac |
253 |
Q |
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| T |
32707216 |
tgattaaattaacaagtgttatcaaccttgaatcattgtatgttttgattcacaatgagttctggaaaatcactgagctaagaagaatccatcaaatcac |
32707315 |
T |
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| Q |
254 |
tcttcagccaactcatcagtgacaacctcatctgcttcattccaagtgaacgt |
306 |
Q |
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| T |
32707316 |
tcttcagccaactcatcagtgacaacctcatctgcttcagtccaagtgaacgt |
32707368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 328 - 442
Target Start/End: Original strand, 32707678 - 32707792
Alignment:
| Q |
328 |
aaatataccaccgcgtttacactttacacttggtttctttggttggtacatatgaatgtttacactaagttttcctaaaacaattatgttttcgcagttt |
427 |
Q |
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| T |
32707678 |
aaatataccaccgcgtttacactttacacttggtttctttggttggtacatatgaatgtttacactaagtttttctaaaacaattatgttttcgcagttt |
32707777 |
T |
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| Q |
428 |
tctataattaaaaaa |
442 |
Q |
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| T |
32707778 |
tctataattaaaaaa |
32707792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 16895165 - 16895264
Alignment:
| Q |
50 |
tcctaagagcctactctactaacttgctccttgggtgtgctctcaaagttcttatcagcacttgctacctcaaaatcatccctcctatggaactctttaa |
149 |
Q |
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|||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16895165 |
tcctaagagcctactctactcacttgttccttggatgtgctctcaaagatcttatcagcacttgctacctcaaaaccatccctcctatggaactctttaa |
16895264 |
T |
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